Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38210 575 / 0 Protein kinase family protein (.1) AT1G66880 569 / 0 Protein kinase superfamily protein (.1) AT1G18390 516 / 4e-175 Protein kinase superfamily protein (.1.2) AT1G25390 441 / 3e-146 Protein kinase superfamily protein (.1) AT2G23450 298 / 1e-90 Protein kinase superfamily protein (.1.2) AT1G69910 281 / 7e-85 Protein kinase superfamily protein (.1) AT5G66790 268 / 2e-80 Protein kinase superfamily protein (.1) AT5G02070 254 / 8e-75 Protein kinase family protein (.1) AT1G16130 241 / 2e-69 WAKL2 wall associated kinase-like 2 (.1) AT1G66910 239 / 4e-69 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G096900 [exp] 1069 / 0 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.017G118250 [exp] 986 / 0 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 841 / 0 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.004G097100 [exp] 699 / 0 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.012G054725 [exp] 576 / 0 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.015G044750 [exp] 576 / 0 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G117340 [exp] 573 / 0 AT5G38260 456 / 9e-153 Protein kinase superfamily protein (.1) Potri.015G045101 [exp] 551 / 0 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G120800 [exp] 509 / 4e-171 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022432 [exp] 503 / 1e-169 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 502 / 2e-169 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028494 [exp] 466 / 2e-153 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10029132 [exp] 449 / 2e-149 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10009150 [exp] 404 / 6e-135 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1) Lus10039725 [exp] 327 / 4e-102 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10032741 [exp] 296 / 1e-89 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 286 / 4e-86 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 276 / 3e-83 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10019657 [exp] 273 / 8e-82 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G118100.3 pacid=42812847 polypeptide=Potri.017G118100.3.p locus=Potri.017G118100 ID=Potri.017G118100.3.v4.1 annot-version=v4.1 ATGCAACCCCATGTCTTCCCAGCCATGTCTTGGTTTATCACGTTCATAACCATGATCTTTATTTGTGGTTCGGCACTTGTGTTTGCCAACGACGATGAGC GATATGTAAACTGCAGCAACTCGTTTGATTGTGGAGATGTTAAGGGTGTTGGTTATCCTTTCTGGGGATCCAATAGGCCTGATTACTGTGGCTATCCGGA GTTGAAGCTCGACTGCAGTGACCAAGATCCGGAGATCACAATCGAGAAATTGACTTACAAAGTTCTTGGCATCGATAACCAGACACGGACTCTCAGTGTT GCTCGAAAAGATTATGCAGAAAACATCTGTCCGACACTCATTCTCAACACCACTTGGATACCCAATCTATTGAACTACACATCCGATGATCAGAACATAA CAATCTACTATGGTTGCCCCACTCAAGGTGCACCATCTTCACTTTTTGTACCTCAGTTTCCCTGCTACATAAACGCCACTGGGATGACGGGCTACTTTAC AGCATTTGCCAACTTGTCGGTTCTCGGAAGCTCTGCTTCTAGCTTGATCAGTTACCTGGCAACGTGCAACGATAGCATTAAAGTTCCAGTACGTGAATCA GCTTTTCAGCAAATTTTAAGTACTCGAACTGCAGCACAGCTGCTGGGAAGTCTAAATCAAGGTTTTGGTTTGGAGTGGAATGCATCTAATAACTTCTGTG ATACATGCCAATCTTCTGGCGGTAAGTGTGGGTACAACCAGACCACTACAGCATTTACTTGTTATTGCAAGGATCAACCTCAACAATTTTCTTGCCAACA ATCTCCACCTGAAGCTCAATCCCCAACTAATGATCAATCCTCAAAGAAGAAGACTAAGGATCGGACACTTGTAATAGGACTTAGCACAGCAGGTGCAGTC GTTATTGGTATCTTTTTTGGATGCTGGGTCTTGTTTGTCGTACAACGAAGGAAAAGAAAATCTGCCCAGGTGAAAAGCAAAGGCCTGCCTGTAGCTACAC CTCCTTCAAGCAAAGGCCTTACTACTTCAACTAATCTCTCTCAAGCCACTACTTCTCTTACCTCCTCAAAGTCATACCTTGAAAAGGGCAGTACCTACTT TGGAGTGCCGGTGTTCAGCTACAGTGAACTTGAGGAAGCCACTAATTGTTTCGATCCTTCTAAGGAACTTGGAGATGGAGGGTTTGGCACTGTTTACCAT GGTGTACTCAAGGATGGACGTGTGGTTGCTGTCAAGCGCCTTTATGAGAACAACATGAGACGTGCTGAGCAGTTTATGAATGAAATTGAGATCCTAGCTC ATCTACGGCACAAGAACCTGGTGATACTTTATGGATGCACCACAAGGCACAGCCATGAGCTTCTACTTGTTTATGAGTACATTCCAAACGGAACGGTTGC TGATCATCTTCATGGAAGACAGTCGAACTCTGGTTTGCTCACATGGCCTGTTCGGTTGAGCATTGCTATAGAGACAGCCAGTGCTCTCGCATACCTCCAC ACTTCAGATGTCATACACCGTGATGTCAAAACCACTAACATTCTCCTAGACAATGACTTCCATGTGAAAGTGGCTGATTTTGGTTTGTCGAGATTGTTCC CAAATGATGTCACGCATGTGTCGACTGCTCCACAGGGAACACCGGGATACGTTGATCCGGAGTATTATCAATGCTACCAACTCACCAACAAGAGTGATGT TTACAGCTTTGGTGTAGTCTTGATTGAGCTGATATCATCTTTACAAGCAGTGGACACCAATAGGCATCGGCACGATATTAATCTGTCCAACATGGCAGTC AACAAAATCCAAAATCATGCTTTAAATGAGTTGGTTGATCCATTTCTTGGATTCGATAAGGATATCGTAGTGAGAAGGATGGTAACATCAGTTGCAGAAT TAGCTTTCCGGTGTTTGCAACAAGATAGAGAAATGAGGCCAGCTATGGAAGAAGTATTGGAGGCATTAAAAAGAATCGAGAAGGAAAACTATGGAGCAGG GAATGCAGAAGTATTGGATATTAGGGATGATGATGTCGGGTTACTGAAGCATGCTCCTCCCCCAGTTCAACTTTCACCGGACTCCTTGTCTGATCCATTT TGGGCCGACAGTTCTTCAACCATAACCCCACATTCCTACTAG
AA sequence Show only first row Show all	>Potri.017G118100.3 pacid=42812847 polypeptide=Potri.017G118100.3.p locus=Potri.017G118100 ID=Potri.017G118100.3.v4.1 annot-version=v4.1 MQPHVFPAMSWFITFITMIFICGSALVFANDDERYVNCSNSFDCGDVKGVGYPFWGSNRPDYCGYPELKLDCSDQDPEITIEKLTYKVLGIDNQTRTLSV ARKDYAENICPTLILNTTWIPNLLNYTSDDQNITIYYGCPTQGAPSSLFVPQFPCYINATGMTGYFTAFANLSVLGSSASSLISYLATCNDSIKVPVRES AFQQILSTRTAAQLLGSLNQGFGLEWNASNNFCDTCQSSGGKCGYNQTTTAFTCYCKDQPQQFSCQQSPPEAQSPTNDQSSKKKTKDRTLVIGLSTAGAV VIGIFFGCWVLFVVQRRKRKSAQVKSKGLPVATPPSSKGLTTSTNLSQATTSLTSSKSYLEKGSTYFGVPVFSYSELEEATNCFDPSKELGDGGFGTVYH GVLKDGRVVAVKRLYENNMRRAEQFMNEIEILAHLRHKNLVILYGCTTRHSHELLLVYEYIPNGTVADHLHGRQSNSGLLTWPVRLSIAIETASALAYLH TSDVIHRDVKTTNILLDNDFHVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYYQCYQLTNKSDVYSFGVVLIELISSLQAVDTNRHRHDINLSNMAV NKIQNHALNELVDPFLGFDKDIVVRRMVTSVAELAFRCLQQDREMRPAMEEVLEALKRIEKENYGAGNAEVLDIRDDDVGLLKHAPPPVQLSPDSLSDPF WADSSSTITPHSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38210			Protein kinase family protein ...		Potri.017G118100 [exp]	0	1
AT4G23420			NAD(P)-binding Rossmann-fold s...		Potri.003G128800 [exp]	1.41	0.9369
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G008500 [exp]	1.41	0.9391	Pt-WRKY11.1
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Potri.001G352400 [exp]	2.44	0.9122
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	2.82	0.9278
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.016G097400 [exp]	3.00	0.9325	Pt-DOGT1.1
AT1G30755			Protein of unknown function (D...		Potri.002G021400 [exp]	3.87	0.9186
AT1G58420			Uncharacterised conserved prot...		Potri.007G006100 [exp]	5.09	0.8870
AT4G29050			Concanavalin A-like lectin pro...		Potri.003G196600 [exp]	7.74	0.8871
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014600 [exp]	8.00	0.9006
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.001G112100 [exp]	8.77	0.8907

Compare expression of checked genes

Potri.017G118100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.