Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32360 666 / 0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT5G53460 61 / 1e-09 GLT1 NADH-dependent glutamate synthase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G011700 [exp] 60 / 3e-09 AT5G53460 3649 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.015G017500 [exp] 59 / 5e-09 AT5G53460 3665 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015217 [exp] 698 / 0 AT4G32360 661 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10031463 [exp] 686 / 0 AT4G32360 659 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10000390 [exp] 57 / 2e-08 AT5G53460 3795 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10019020 [exp] 43 / 0.0007 AT5G53460 1280 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF07992 [poplar] [flax] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.017G118801.1 pacid=42813033 polypeptide=Potri.017G118801.1.p locus=Potri.017G118801 ID=Potri.017G118801.1.v4.1 annot-version=v4.1 ATGGCAATATTTGATCAAGCAATCAGACGGCTTTCATTATCATTATCAAGAAAAAGAAGCAGCTTAAGCTTCTCAACACTTTCATCCAATCCTCTACGAG TCTGTGTTGTTGGAACTGGCCCTGCTGGCTTCTACACTGCTGAAAAGATGCTGAAGGCGCATCAAGGAGCTGAAGTTGATATCATAGATCGTTTGCCCAC ACCTTTCGGTTTAGTCCGCTCTGGCGTGGCACCTGACCACCCCGATACTAAGATTGTGATGAACCAGTTCTCAAAGGTTGCGCAACATGAACGGTGCTCC TTTTTTGGAAATGTCACTCTTGGGTCCTCTGTCTCTCTCTCAGAACTTCGTGAGCTGTATCATGTGGTAGTGCTTGCTTACGGTGCTGAGAGTGATAGAG CTCTAGGTATTCCAGGAGAATATTTGTCAGGGATACACTCTGCTAGAGAATTTGTTTGGTGGTATAATGGGCACCCAGATGGCAAAAACTTGAGTCCTGA TTTGAAGAGCACCGATACAGCTGTTATTCTAGGCCAGGGCAATGTAGCGCTTGATGTTGCCCGTATCCTCCTACAATCAACATCAGTGCTGGCAACAACT GATATTGCCAGTCATGCTTTGGAAGCTCTAGAGCAGAGCTCTATAAGAAAAGTATATCTAGTTGGAAGACGTGGACCAGCCCAAGCAGCTTGTACTGCGA AAGAGCTAAGAGAAGTTCTTGGTATTAAAGATTTGTGTATTCACATCAGTGAAGTTGATTTACGAAAAAGTCCAGAAGATGAGGAAGTGCTTAAAAATAA TCGAATCCATAGGAGGGTTTATGAGTTGCTTTCAAAAGCAGCTGCTTCAGCACCTTCTCATCCTAGTTCAAGTCAGCGTGAACTGCACTTTGTTTTCTTC CGGAAACCTGATAGGTTTCTAGATTCAGGTGAAGGCAGTGGCCGTGTTGCTGGTGTGCATTTTGAGAAGACAATGCTTAAAGCTGTTGGCCCTGGAAGGC AGATTGCTGTGGGTACTGGATCATATGAGGACCTTGACTGCGGGTTGGTGCTAAAGAGCATTGGTTACAAATCAGTGCCAGTCGATGGTTTACCATTTGA TCATGAAAAAGGTGTGGTTCCAAATATTAAAGGTCGTGTTCTTGCTGATACTTCAGGAGATCCTACGTTGCTCGAGAAAGGTCTGTATGTGTGTGGGTGG TTGAAGAGGGGGCCAACTGGGATTATTGCTACAAATCTCTACTGTGCTGAAGAAACAGTGGCAAGTATATCAGAAGATGTTCATCAAGGAGAGATAGCAT CCGCATCTACCTTGCCAAAGCCTGGCCGACAGGGACTCCTTCAGTTGCTTGATAATAGAGGTGTTAGAGTTGTTCCATTCAGCGCCTGGGAAAAGATCGA CTCTGAAGAGAGAAGGCTTGGGAACTTGAGAAGTAAGCCTAGAGAAAAATTAACCACATTTGAGGACCTACTGAAAGCTGCCACAGAGTGA
AA sequence Show only first row Show all	>Potri.017G118801.1 pacid=42813033 polypeptide=Potri.017G118801.1.p locus=Potri.017G118801 ID=Potri.017G118801.1.v4.1 annot-version=v4.1 MAIFDQAIRRLSLSLSRKRSSLSFSTLSSNPLRVCVVGTGPAGFYTAEKMLKAHQGAEVDIIDRLPTPFGLVRSGVAPDHPDTKIVMNQFSKVAQHERCS FFGNVTLGSSVSLSELRELYHVVVLAYGAESDRALGIPGEYLSGIHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLQSTSVLATT DIASHALEALEQSSIRKVYLVGRRGPAQAACTAKELREVLGIKDLCIHISEVDLRKSPEDEEVLKNNRIHRRVYELLSKAAASAPSHPSSSQRELHFVFF RKPDRFLDSGEGSGRVAGVHFEKTMLKAVGPGRQIAVGTGSYEDLDCGLVLKSIGYKSVPVDGLPFDHEKGVVPNIKGRVLADTSGDPTLLEKGLYVCGW LKRGPTGIIATNLYCAEETVASISEDVHQGEIASASTLPKPGRQGLLQLLDNRGVRVVPFSAWEKIDSEERRLGNLRSKPREKLTTFEDLLKAATE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32360			Pyridine nucleotide-disulphide...		Potri.017G118801 [exp]	0	1
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	4.47	0.8726
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	8.66	0.8481
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.012G143900 [exp]	9.94	0.7945
					Potri.009G069751 [exp]	14.69	0.7675
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.008G064800 [exp]	15.87	0.7813
AT5G37930			Protein with RING/U-box and TR...		Potri.004G091800 [exp]	18.02	0.7938
AT4G37190			unknown protein		Potri.001G361900 [exp]	20.97	0.7489
AT3G50380			Protein of unknown function (D...		Potri.007G034900 [exp]	26.26	0.7909
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.001G102900 [exp]	26.83	0.7863
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	27.16	0.8036

Compare expression of checked genes

Potri.017G118801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.