Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66840 305 / 5e-95 PMI2, WEB2 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) AT5G38150 261 / 6e-79 PMI15 plastid movement impaired 15, Plant protein of unknown function (DUF827) (.1) AT5G55860 129 / 4e-31 Plant protein of unknown function (DUF827) (.1) AT2G26570 47 / 3e-05 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G095800 [exp] 904 / 0 AT1G66840 314 / 1e-98 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 140 / 5e-35 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033572 [exp] 435 / 5e-145 AT1G66840 274 / 2e-83 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Lus10017614 [exp] 420 / 5e-139 AT1G66840 268 / 3e-81 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 101 / 4e-22 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 95 / 4e-20 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10037354 [exp] 50 / 7e-06 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10035778 [exp] 45 / 0.0001 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [poplar] [flax] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Potri.017G118900.4 pacid=42813311 polypeptide=Potri.017G118900.4.p locus=Potri.017G118900 ID=Potri.017G118900.4.v4.1 annot-version=v4.1 ATGGATAGGAGAGTGTTTGATGATAGAAGAAGAATTGGGACAGTGAAGGCAGCTGTTAATATGTATGGAGAAAGAATTCTTGAAAGTAGTAGTTCTTCAC TGAAGACACCAGCCCAGATGGATTTGCCTGAGAAGTCTTCCTCAAGAGCTAAAGAGCTGCACATGGCAAAGAGAGACTTGGTTAGATATAAAGAGAATAG AAGGGCTGCGGAGTCGGCTAAAGTGAAAGCAGAATCAGAGCTCTCGGAGGCGAAAAGAACGGTGAAAGAGCTTGTTTTACAGATTGAGAAATCAAATTTG AAGGTAAAAGCTCAGGTGAGAGACATGGAAAGGCTAAACAAGCTGAGTAAGCGCCAAGATATGGCTTTAATTGTTGGGAGTGATGAGAGCCATCAGTATG CAGAAGTGATAAGGGAGTTGGAAGGTGTGAAGCAAGAACTGAGTAAACTTAAGCTTGAGATGGCTTCTGTTTTGGAAGCGAAAACTCGGGCAGAGAAGGA AATAGCAACCTCAATTTCTAAATTATCGTCTAATATGAGCCATGCGGAAGCACTCAGGAAGAAGATTGATGAGGCAAATGAGGAGCAAGTGCTAGTTGAG TTGGCACAGATTGAGGCCTTGAAAGAATTTGGAGAAATTCAAGCTCAAAGAGAGAAGGAAGCGAGAGAATTCTCGTCCGCAATGCAGGAAACTAAGAACA AAAGGAAGAATGTCAAAGAGGAAATCAGCAGCTCTACAGATCTTGAGTCTAAATTGGCTGTTACATTATATGACGTGAATTTGATACAGCATGAACTAAA GCTTGCTAAAGATAAGGACGCAAAGGTACAAAGAAATGACAGCATGAAGCATCTGGGAGGCAGTTTTCGGGAAGGCAAGCAATTGGAGGATTCCTCTTTA CTGAAATCCATAACTGAAGAATTGCAGGCAGCTAAGAAGGAATTGGCTTCAACTAGGGAAGAGGGTTTTCAGTTCATGACCTCAATGGATATCGTAAGGA ATGAGCTGAAGCATGTTACAGAAGAAACAGTTCAGTTGAAGAAAGTGAAAGAGAAAGCTGATATAACTGCTCAAAATCTTAATTCAAAGCTCCTGAGAGC AAAGTCTAAATTGGAAACTGCAACTGCAGTTGAGGAGAAGGCAAGATCAACTTTATCCAGTCTGTCTGTGACACTTGAACAGTTGAAGACCGAAGCGGAG GTGGCAAGGAAAGAGAAGAAGCTTATCTGCGAAGAAACTGCAAAAATCAAGGCAGAAATCCGCAATACTGATTCTCAAATAGACCTCACTGAAGAAAAAT TGCAGTACGCAATTCAGGAGCTTGATGCAGTCAAAAAGTCAGAGTCTTCAGCTCTTCAGAATTTGAAAAATGTTATTGAGAACTCCATGAGATCTAGAGC TTCTGCTTCTCAACATAGTTCGTCGATTACTATCTCAAAGTTTGAGTACGAGTATTTAACTGGACATGCAGCCATGGCTGAAGAAATTGCAGACAAAAAG GTAGCAGCAGCTCATGCATGGATTGAAGCATTGAAAGCCAGTGAAAAGGAGATATTGATGAAAATTGAACTAGCTCATGGAGACATCAGAGAAACAAGGG TGGAGGAAGAGAAAGAGATATATAGAACTGAGAGTTCACTATCTGCTAAAAGAATGGTAGAGGGAGAGCTTCCAAAATGGAGACAAGTGAGCAAGAAAAA TACAGAAGCCGAGAACCAGCAACAGCCATTGCCAAGGAAATCCATGAAAGCTAATGGCAATCTGACTCCATCAAGACGTTCAAAGCTTCGAAATGCTGGT TCTCCATCAGTTCGAATGACTCCTCGGATAACTCCTAGATCAACTTCTATTGCTATCAGGAAGAAAAGAACAATTGTGCCAAATTTAGCCAAGTTATTCA TCGGGAAAAAAAGTTGA
AA sequence Show only first row Show all	>Potri.017G118900.4 pacid=42813311 polypeptide=Potri.017G118900.4.p locus=Potri.017G118900 ID=Potri.017G118900.4.v4.1 annot-version=v4.1 MDRRVFDDRRRIGTVKAAVNMYGERILESSSSSLKTPAQMDLPEKSSSRAKELHMAKRDLVRYKENRRAAESAKVKAESELSEAKRTVKELVLQIEKSNL KVKAQVRDMERLNKLSKRQDMALIVGSDESHQYAEVIRELEGVKQELSKLKLEMASVLEAKTRAEKEIATSISKLSSNMSHAEALRKKIDEANEEQVLVE LAQIEALKEFGEIQAQREKEAREFSSAMQETKNKRKNVKEEISSSTDLESKLAVTLYDVNLIQHELKLAKDKDAKVQRNDSMKHLGGSFREGKQLEDSSL LKSITEELQAAKKELASTREEGFQFMTSMDIVRNELKHVTEETVQLKKVKEKADITAQNLNSKLLRAKSKLETATAVEEKARSTLSSLSVTLEQLKTEAE VARKEKKLICEETAKIKAEIRNTDSQIDLTEEKLQYAIQELDAVKKSESSALQNLKNVIENSMRSRASASQHSSSITISKFEYEYLTGHAAMAEEIADKK VAAAHAWIEALKASEKEILMKIELAHGDIRETRVEEEKEIYRTESSLSAKRMVEGELPKWRQVSKKNTEAENQQQPLPRKSMKANGNLTPSRRSKLRNAG SPSVRMTPRITPRSTSIAIRKKRTIVPNLAKLFIGKKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.017G118900 [exp]	0	1
AT5G01920		STN8	State transition 8, Protein ki...		Potri.006G109700 [exp]	2.00	0.9817
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Potri.010G255500 [exp]	3.16	0.9812
AT1G72640			NAD(P)-binding Rossmann-fold s...		Potri.003G063800 [exp]	3.87	0.9752
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.008G172100 [exp]	4.58	0.9769	RNP1.2
AT2G42220			Rhodanese/Cell cycle control p...		Potri.006G059200 [exp]	5.91	0.9727
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Potri.003G031800 [exp]	8.12	0.9605
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Potri.010G210200 [exp]	8.12	0.9728
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Potri.006G139600 [exp]	8.24	0.9768	Lhca6,Pt-LHCA2*1.1
AT4G36390			Methylthiotransferase (.1)		Potri.007G018500 [exp]	9.64	0.9610
AT1G80380			P-loop containing nucleoside t...		Potri.003G058500 [exp]	10.39	0.9697

Compare expression of checked genes

Potri.017G118900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.