Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01210 711 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 674 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 650 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 488 / 2e-163 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 379 / 3e-122 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 369 / 6e-117 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 357 / 4e-114 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 352 / 5e-111 RLK receptor-like kinase (.1) AT4G34220 338 / 1e-105 Leucine-rich repeat protein kinase family protein (.1) AT2G15300 323 / 9e-100 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G095700 [exp] 1212 / 0 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 743 / 0 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 735 / 0 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 499 / 4e-167 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 495 / 2e-166 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 375 / 1e-120 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G050800 [exp] 366 / 2e-117 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 369 / 4e-117 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 352 / 9e-111 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017611 [exp] 780 / 0 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 772 / 0 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 638 / 0 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 626 / 0 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 478 / 2e-159 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 442 / 2e-146 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021022 [exp] 332 / 2e-104 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010263 [exp] 334 / 1e-103 AT4G37250 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 324 / 3e-100 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 318 / 4e-98 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.017G119000.1 pacid=42814081 polypeptide=Potri.017G119000.1.p locus=Potri.017G119000 ID=Potri.017G119000.1.v4.1 annot-version=v4.1 ATGGTAGAGATGGTTCTGCAATTTGCCTCTCTACTTTTCTTTATAGTCCACTATAGTGCTTTTGTCGGTTCTGTTAATGATGAAGGTCTTGCTCTTCTAT CCTTCAAGCAATCGATAGAATACTCCACAGCTCATTATATAGACAACTGGAACTCATCGGATGCAAACCCATGTTCATGGCATGGAGTTATGTGCAGAGA AGAAAAGGTCTTTTCTCTGAGGCTTCCAAATAAAGGGCTGGCTGGGAATCTGCAACTTGATGCTGGTAAGCTTGTTGCATTAAGTCATGTTGATCTCAGG AATAACCACTTCTCTGGAAGTTTCCCAGTCGAACTCTTTAATGCGACAGAATTAATATCTTTGATCCTCTCGGGAAACTCATTTTCCGGGCCAGTTCCTG AAGAGATAGTGAACCTCAAGTACCTACAGACTCTTGATCTTTCCCAAAATTCTTTCAATGCGTCATTACCCTCATCTCTAATTCAATGCAAGAGACTGAA GAATCTTGTAGTCAGCGGAAATAGTTTCACTGGCTCTCTACCAGATGCACTAGGAACCAATTTGATTAGGCTTCGGACACTGAATCTTTCACATAACAGC TTTAGCGGTTTGATCCCTGGCAGCCTAGGCAACTTGCCAAGCTTGCAAGGAGCGCTTGATCTATCTCACAATCTATTCAATGGCCCAATTCCAGCAAGCC TAGGAAAACTTCCTAAGTTGGTTTATATCAATCTCACTTGCAACAATCTTAGCGGTGCAATACCACAAAATGGTGCTCTAAAGAATGTAGGTCCAGCTGC TTTTATTGGCAACCCTCTCCTTTGTGGGCCTCCTCTGAAAACTCGATGCCCCTTGGCCGCTTCCCATCCAAATATCGACCCTGAACCCTTAGCAGTAGGA GACAGCTCAGGCAAGAGGAGGGGAGGAAAATGGTGCTGGATTGTGATTGCAACTGTTGCGGGTACAGTGGTAGGAATTTGCTTAGTCAGTGTATCTTTCT GTTACTGGTACAAGAAGTCTTATGGTTGTAAGGAAAGCAAACGTACACAGGGCTGTAGTTTTGAAGAAAAATCAATGGTTAGAAAGGAAATGTTCTGCTT CAGAACAGATGACTTGGAATCTCTATCGGAAACTATGGAACAGTGCACTTTTGTTCCATTAGACTCGAAGGTCAGTTTTGATCTTGAACAACTTCTCAAA GCGTCTGCTTTTCTGGTTGGAAAGAGCAGTATAGGGATCGTATATAAAGTTGTTCTTGAAAAGGGGCTAACTGTTGCCGTAAGGAGACTGGAAGATGGAG GTTCTCAGAGGTTCAGGGAGTTTAAACCTGCAGTGGAAGCAATTGGCAAAATTAGACATCCAAACATAGTCAGCCTTCTAGCTTATTGTTGGGGCATCAA CGAGAAGTTGCTCATCTATGATTATGTGCCCAATGGTGACCTTGCCACCGTGATTCATGGGAGAACAGGAATGACAAACTTCAAACCTCTTTCATGGTCT GTTCGACTTAAAATCATGAAAGGATTAGCAAAGGGCTTAGCTTTTCTACATGAATGCAGTCCCAAAAGGTATGTCCATGGAAATTTAAAGACTCGCAACA TACTGCTCGGAGAGAACATGGAGCCCCGCATCTCAGATTTTGGACTCAACTGCTTTGCTTATACAAGTAAAGAATCCTTACCGGGGGAACAAATGACAAG CGGAACACCACAAGAAGGTTCTCCTTACGCGTTGACACCAACACATTCAAGCACGCCTGGGTCTTGTTATGAAGCTCCTGAGTCTTCAAAACTCATAAAA CCATCACAGAAATGGGATGTTTACTCATTTGGGGTGATTCTATTGGAGATGATTTCTGGGAAGTCACCTATGATGCAGGTAAGTCTATCAGGAATGGATC TAGTCCAATGGATTCAGCTTAGCTTTGAAGTTAAACCACCATCTGAAGTCCTAGATCCCTTCTTAACTCGTGAGTCAGACAAGAAACATGAAATGGTTGC AGTGCTTAAGATTGCTCTAGCCTGTGTTCAAGCAAGCCCTGACAAGAGACCCTCCATGAAGAATGCGAGTGATAATCTGGGAAGATTGGTCCCTTTGACT TAA
AA sequence Show only first row Show all	>Potri.017G119000.1 pacid=42814081 polypeptide=Potri.017G119000.1.p locus=Potri.017G119000 ID=Potri.017G119000.1.v4.1 annot-version=v4.1 MVEMVLQFASLLFFIVHYSAFVGSVNDEGLALLSFKQSIEYSTAHYIDNWNSSDANPCSWHGVMCREEKVFSLRLPNKGLAGNLQLDAGKLVALSHVDLR NNHFSGSFPVELFNATELISLILSGNSFSGPVPEEIVNLKYLQTLDLSQNSFNASLPSSLIQCKRLKNLVVSGNSFTGSLPDALGTNLIRLRTLNLSHNS FSGLIPGSLGNLPSLQGALDLSHNLFNGPIPASLGKLPKLVYINLTCNNLSGAIPQNGALKNVGPAAFIGNPLLCGPPLKTRCPLAASHPNIDPEPLAVG DSSGKRRGGKWCWIVIATVAGTVVGICLVSVSFCYWYKKSYGCKESKRTQGCSFEEKSMVRKEMFCFRTDDLESLSETMEQCTFVPLDSKVSFDLEQLLK ASAFLVGKSSIGIVYKVVLEKGLTVAVRRLEDGGSQRFREFKPAVEAIGKIRHPNIVSLLAYCWGINEKLLIYDYVPNGDLATVIHGRTGMTNFKPLSWS VRLKIMKGLAKGLAFLHECSPKRYVHGNLKTRNILLGENMEPRISDFGLNCFAYTSKESLPGEQMTSGTPQEGSPYALTPTHSSTPGSCYEAPESSKLIK PSQKWDVYSFGVILLEMISGKSPMMQVSLSGMDLVQWIQLSFEVKPPSEVLDPFLTRESDKKHEMVAVLKIALACVQASPDKRPSMKNASDNLGRLVPLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01210			Leucine-rich repeat protein ki...		Potri.017G119000 [exp]	0	1
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Potri.010G159800 [exp]	14.49	0.7280
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Potri.010G028500 [exp]	28.12	0.7311
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.010G089200 [exp]	34.29	0.7299
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Potri.001G060600 [exp]	57.15	0.7210
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.008G057100 [exp]	111.33	0.6809	PtEXPA7,Pt-EXPA4.1

Compare expression of checked genes

Potri.017G119000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.