Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16220 126 / 2e-31 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 103 / 5e-23 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT3G18230 99 / 8e-22 Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 84 / 4e-17 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G25300 72 / 6e-14 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 73 / 2e-13 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G04700 72 / 6e-13 PB1 domain-containing protein tyrosine kinase (.1) AT5G49920 70 / 6e-13 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 69 / 2e-12 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 67 / 1e-11 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G095600 [exp] 610 / 0 AT5G16220 140 / 2e-36 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 115 / 6e-27 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 106 / 5e-24 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 104 / 2e-23 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 90 / 3e-19 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 85 / 2e-17 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.003G176100 [exp] 74 / 2e-13 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.001G052000 [exp] 72 / 6e-13 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.001G285800 [exp] 71 / 8e-13 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033570 [exp] 283 / 2e-89 AT5G16220 194 / 9e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10017612 [exp] 261 / 6e-81 AT5G16220 185 / 1e-52 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 99 / 2e-22 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007965 [exp] 99 / 5e-22 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007952 [exp] 97 / 7e-21 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 91 / 2e-19 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10013495 [exp] 87 / 1e-17 AT2G01190 176 / 1e-46 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 86 / 1e-17 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 82 / 2e-16 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 74 / 6e-15 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Potri.017G119100.2 pacid=42814114 polypeptide=Potri.017G119100.2.p locus=Potri.017G119100 ID=Potri.017G119100.2.v4.1 annot-version=v4.1 ATGGACCCTCAACCACCACAACAACCTCAACCACCGGCTACCACTCCAAAACTCCGTCTAATGTGCAGCTACAATGGCCACATAATCCCAAACCCCCACA CCAAATCCCTCTCTTATTCAGGTGGTGACACCCGCCTCATCACCATCCCCACTGGTACCAGCTCCGCCACCGCCACAAACACCACCTCCAACGGTCTCAC GCTCTCTTCTTTAATCTCTCACTTATCGACAACTCTGAAAATAACCGTACCAATCACTCTAAAATACCAACTTCCACATCACAATCTTGATTCTCTCATT TCACTTGCCTCTGATGAAGATGTCCTTATCATGCTTGATGAGCACCAAAACAACCGTACACCTTCACGTCTTAGATTATTCGTGTTTCCAACCAAATCCA TTTTGAGTCAGCCCGAGTTAAAGGCTAAAACTCAATTAAATCACCCAAAGACTGAAACTTGGTTTGTTGATGCATTGAAGAATACAAAGATTGTGAATCT TGAGGGTAATGGTAATAATGGTGGTGGGTTCTGTGGAGCTGAGTCCATGGTCCTGGAAACTTCTTCTTCTTTTGGGTCAACTTCGTCTTCGGTTTCGTTA TCTAATTTGGGTGTTAAAGGTGGTTTTGTTGAGGATAATGGGACTGGTTTGCTGGATAATAAGGTTCAATTGTCAACCCCAGAAGGAATTTCAAGTGATC ATGGTGTGGGAACTGCAGTTTGTCAAGATCCACAGTTTGTGACATATCAAGATCCAGTCGGGGCTGTTACTTCAGTGGAGAATAAAGTTTCTCTAATAAA TCCATTTGATTCAGAGAGGAAAATCTCTAATCCTCCTCCTCTCATTGGGGTTGAGATGCATAATACAGTTCCCGTTTCTGGGTATCCATTGTCATTACAA TATGATCAGTTACAACAGCTGCAATTTGTTCAAACAGCTGCCCCACAGTATGTACCCCAGAACACAACTGGTGTAGTGCCATTGTCTTCTTACTATGTGA TGAGTTCTCCGGTGCCTCAGCAGCAGGTTTATTATCAGAGCAACCAACCTCAGCCGATATACCTAGTGCCTGTTGCACAGCCTTACAATTTGCCTATGCA AAATAGTTTGATGAACACTGCAACTGTTGCTTCTAGTCGCCCTCCCATACATCCTGATTCGTCTATGTACCCTGCTCAAATGGTGTACAATGCCGCTGCT AGTTTACCCGTAGCTGAGTTAACCTCACAAGTTTATAGAACAAGTTCACCCGTTACTGTACCACATGTTAAAAATCAGAAACAAGGTGGAGGGCCTCCTC AAATGAATCACCAAGGTCAGCCCATATGTGCTGCTTCTATGGAGACTGGTAAACAAATTGATGACGATCCTGTACATGCCCAAATATACAAGTCTCAGCC TCCACCTCCAACTTTGCCTTCCCAGTACCAAACCATGACCCCAGCCACAACAATCTTGTTATCAGAGGCTATGGCACAGTTAAATACAGATAATATTAAG CAGAAACAGCCTAGAACCTCACAGCCACAATGA
AA sequence Show only first row Show all	>Potri.017G119100.2 pacid=42814114 polypeptide=Potri.017G119100.2.p locus=Potri.017G119100 ID=Potri.017G119100.2.v4.1 annot-version=v4.1 MDPQPPQQPQPPATTPKLRLMCSYNGHIIPNPHTKSLSYSGGDTRLITIPTGTSSATATNTTSNGLTLSSLISHLSTTLKITVPITLKYQLPHHNLDSLI SLASDEDVLIMLDEHQNNRTPSRLRLFVFPTKSILSQPELKAKTQLNHPKTETWFVDALKNTKIVNLEGNGNNGGGFCGAESMVLETSSSFGSTSSSVSL SNLGVKGGFVEDNGTGLLDNKVQLSTPEGISSDHGVGTAVCQDPQFVTYQDPVGAVTSVENKVSLINPFDSERKISNPPPLIGVEMHNTVPVSGYPLSLQ YDQLQQLQFVQTAAPQYVPQNTTGVVPLSSYYVMSSPVPQQQVYYQSNQPQPIYLVPVAQPYNLPMQNSLMNTATVASSRPPIHPDSSMYPAQMVYNAAA SLPVAELTSQVYRTSSPVTVPHVKNQKQGGGPPQMNHQGQPICAASMETGKQIDDDPVHAQIYKSQPPPPTLPSQYQTMTPATTILLSEAMAQLNTDNIK QKQPRTSQPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Potri.017G119100 [exp]	0	1
AT4G25210	GeBP		DNA-binding storekeeper protei...		Potri.001G293900 [exp]	1.41	0.9051
AT2G26920			Ubiquitin-associated/translati...		Potri.009G021900 [exp]	3.16	0.8576
					Potri.007G074433 [exp]	3.74	0.8985
AT5G02850			hydroxyproline-rich glycoprote...		Potri.016G084200 [exp]	5.29	0.8589
AT5G13310			unknown protein		Potri.003G163100 [exp]	5.65	0.8583
AT3G29270			RING/U-box superfamily protein...		Potri.004G125400 [exp]	6.00	0.8567
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.011G065200 [exp]	7.14	0.8490
AT1G10790			unknown protein		Potri.001G210600 [exp]	7.34	0.8378
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.006G085600 [exp]	7.41	0.8099	MYB211,Pt-MYB3.1
					Potri.001G374901 [exp]	7.48	0.8708

Compare expression of checked genes

Potri.017G119100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.