Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58900 49 / 7e-06 F-box/RNI-like superfamily protein (.1.2.3.4) AT2G42720 44 / 0.0002 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT3G59230 44 / 0.0002 RNI-like superfamily protein (.1) AT5G56380 43 / 0.0005 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G13960 43 / 0.0005 F-box/RNI-like superfamily protein (.1) AT3G59000 43 / 0.0005 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G244700 [exp] 190 / 3e-53 AT5G41840 78 / 8e-15 F-box/RNI-like superfamily protein (.1) Potri.006G248600 [exp] 170 / 8e-46 AT5G41840 82 / 3e-16 F-box/RNI-like superfamily protein (.1) Potri.004G095550 [exp] 74 / 2e-15 ND / Potri.005G252701 [exp] 70 / 1e-13 AT5G02930 52 / 8e-08 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 53 / 5e-07 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.001G395000 [exp] 50 / 4e-06 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.012G099400 [exp] 49 / 1e-05 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104100 [exp] 48 / 1e-05 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.013G151200 [exp] 47 / 2e-05 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042304 [exp] 50 / 9e-07 AT2G39415 59 / 1e-11 F-box family protein (.1) Lus10038967 [exp] 51 / 2e-06 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10020292 [exp] 49 / 1e-05 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10020636 [exp] 42 / 3e-05 AT5G56810 52 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024701 [exp] 43 / 8e-05 AT1G78760 70 / 4e-15 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 45 / 0.0002 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10006970 [exp] 44 / 0.0003 AT4G03220 74 / 3e-14 Protein with RNI-like/FBD-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.017G119200.2 pacid=42813765 polypeptide=Potri.017G119200.2.p locus=Potri.017G119200 ID=Potri.017G119200.2.v4.1 annot-version=v4.1 ATGGAGAGCCCATCAAAGCTTATGGTACTGAGCTCTTCTAAGGGAAACAACGTTGCTAATAGCCATGACAGACTCATTGGACTTCCAGAGCACATTATTC ATCACATTATTTCATTCCTTGGGGCTAATGATATTGCTCGGCTAAGCTTTGCCTCGAAAGGATATCGACAGATATGTATTTCTAGTCCTTACTTGTATTT CGATGTTGATTTTGCTTCACATGAATGTGCCACCAAGTGTAGCCAGTTTAAAGAATTTCTCAGCAAGTTTCTGAGATCCCGCAATGGCCAGCGGATACAA CTGCTTCGTTTTCGTTGGCTATGTGATTCATGTGAGTGTTCTCATGAAAGGCCCTATGATTCCTGGGTTTGTGATGCTTTAAGGTGTGATGTTAAAGAGC TTGATATTGGATATCGACTTGATGAACAGAATTGTTTCGCTTTGCCGATGTCGGCAACTGGTTATGCTTCCTTGAGGGTGCTAAAACTGAATTTGCAGGA TTGCTGCTTAGATGACCTCTTGCCAGCTACATTGGTTTCTCTCGAGGTCTTATCGCTGAAATCTTTACGAGTTTATGGGGCCTTATTGGAGGCTTGGATA TCTACCAACTGCCCATCACTTAAAAGGTTAAATCTTGAAGCTATTAAGATTATGGATGGTTTCCCCATCTCCTATACTTCATCTCTTCAAGAGTTGACAA TTCATAATTGCTATGTTAATCACATCTTGGGCTTCTGCAAGAATAGCATCAAGGGCTCGTCCCTTAAAAATGTAACCATATCTGATTGCATATTCAGAGA AGCTGAATTGTCCAAGATAAAAATTGCTTGTTCATCACTTGAAAATTTAACGCTCCGAGGGTGTGTCTTTGGATCCGGGTGCTTTGTTTCCATCGCTTGT CCGCTCCTTGAAAATTTAACAATCCATAAATGTTTTGTAGATGAATCTAATGGCATTGACATCAGACACTGTCCGTCTCTGATAAATCTGATGATAAGTC AGTGCACGTTGCAGTTACTGCATCTCAACATCCCCACTTCCTCCCTTAGAAAATTGTCGATTTTTGAATGCAGCAGTCAGTTTCCTATTAGTATTGCTGT TTCAGCTGAGCAGCTTCAAACTTTGTCATTGAAGTTGTATGGTTCTTGGTGGAAGGGTTCAGTATTTGAAATTCAACCACAGAAATTAATATGTTTACAA GAGGCGATTGTCGAATTCGTTGATCTTCAGTTCTTCATTACTGATAAAGACATCTGCAATTCTGTGTTAAGAGCAGTACAATACGCCCGAGTTTTGCAGT TAAGCATTCAAATTATTGAGGTTCTATCAGAAGAAGATCATGTTAAAATTTTATTTGAGAACTTGCTTGATTTGGTCATGGTATGTGACAAATTAGAGGC CTGCCAAATGATCGCCATGGCCTGCTTTCTCATGAGGGCTCCAAGCCTAAGGACACTGACCATAAGATATGAACAGAAGTCTAGTGGAATTTCTGAAACC GATGTAAAAGAGGATCTTGCCAAGCTCTTGTCTTTGGCTGTGAAGAGGTATCAGTCGAAGCATGGGAATTCAGAAACCCTTTTGCTTGGTGATCAATTGA TGAAACTGAAGCTATCTCTTCACAAAAATTAG
AA sequence Show only first row Show all	>Potri.017G119200.2 pacid=42813765 polypeptide=Potri.017G119200.2.p locus=Potri.017G119200 ID=Potri.017G119200.2.v4.1 annot-version=v4.1 MESPSKLMVLSSSKGNNVANSHDRLIGLPEHIIHHIISFLGANDIARLSFASKGYRQICISSPYLYFDVDFASHECATKCSQFKEFLSKFLRSRNGQRIQ LLRFRWLCDSCECSHERPYDSWVCDALRCDVKELDIGYRLDEQNCFALPMSATGYASLRVLKLNLQDCCLDDLLPATLVSLEVLSLKSLRVYGALLEAWI STNCPSLKRLNLEAIKIMDGFPISYTSSLQELTIHNCYVNHILGFCKNSIKGSSLKNVTISDCIFREAELSKIKIACSSLENLTLRGCVFGSGCFVSIAC PLLENLTIHKCFVDESNGIDIRHCPSLINLMISQCTLQLLHLNIPTSSLRKLSIFECSSQFPISIAVSAEQLQTLSLKLYGSWWKGSVFEIQPQKLICLQ EAIVEFVDLQFFITDKDICNSVLRAVQYARVLQLSIQIIEVLSEEDHVKILFENLLDLVMVCDKLEACQMIAMACFLMRAPSLRTLTIRYEQKSSGISET DVKEDLAKLLSLAVKRYQSKHGNSETLLLGDQLMKLKLSLHKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58900			F-box/RNI-like superfamily pro...		Potri.017G119200 [exp]	0	1
AT4G18425			Protein of unknown function (D...		Potri.011G058000 [exp]	2.00	0.8523
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017500 [exp]	3.16	0.7905	GLT1.2
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.017G059800 [exp]	4.00	0.8047	RALFL32.1
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.008G038200 [exp]	6.63	0.8160	Pt-PAL.2,PAL2
AT1G54460			TPX2 (targeting protein for Xk...		Potri.013G042800 [exp]	10.58	0.7544
AT5G04550			Protein of unknown function (D...		Potri.010G233700 [exp]	10.95	0.7629
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.006G018000 [exp]	16.97	0.7819
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Potri.006G109900 [exp]	17.54	0.7797
AT1G23460			Pectin lyase-like superfamily ...		Potri.001G463000 [exp]	22.00	0.7647
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Potri.011G044500 [exp]	23.02	0.7694	BFN1.1

Compare expression of checked genes

Potri.017G119200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.