Plant FIBer expression Database

Potri.017G119500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02600 460 / 1e-163 ATLPP3, LPP3 lipid phosphate phosphatase 3 (.1.2.3.4.5)
AT2G01180 397 / 7e-139 ATLPP1, ATPAP1 LIPID PHOSPHATE PHOSPHATASE 1, phosphatidic acid phosphatase 1 (.1.2)
AT1G15080 381 / 4e-133 ATLPP2, LPP2, ATPAP2 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
AT3G18220 304 / 2e-102 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G095400
[exp]
565 / 0 AT3G02600 465 / 1e-164 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.010G119400
[exp]
473 / 1e-168 AT3G02600 407 / 9e-143 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.008G124900
[exp]
431 / 3e-152 AT3G02600 420 / 3e-148 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Potri.010G119300
[exp]
402 / 5e-141 AT1G15080 452 / 1e-161 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009155
[exp]
456 / 2e-160 AT3G02600 488 / 1e-172 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10028489
[exp]
427 / 9e-151 AT3G02600 465 / 1e-166 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10007933
[exp]
419 / 1e-140 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Lus10035262
[exp]
395 / 1e-137 AT3G02600 429 / 3e-151 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10034630
[exp]
381 / 3e-132 AT3G02600 418 / 4e-147 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10034629
[exp]
373 / 1e-129 AT1G15080 442 / 4e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Lus10035261
[exp]
370 / 2e-128 AT1G15080 443 / 2e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Lus10013470
[exp]
332 / 3e-114 AT3G02600 326 / 1e-112 lipid phosphate phosphatase 3 (.1.2.3.4.5)
Lus10013469
[exp]
73 / 7e-14 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0525 pap2 PF01569 PAP2 PAP2 superfamily
Representative CDS sequence
>Potri.017G119500.3 pacid=42814101 polypeptide=Potri.017G119500.3.p locus=Potri.017G119500 ID=Potri.017G119500.3.v4.1 annot-version=v4.1
ATGCCTTTGTGGGATTATGGATCTCTTTCTCGCTTTAAGAATTTTAGAGGCTTCTTTCAGTACAAGATGAGAGAGGTCCAAATGAGGGAGTTCCAGCTTG
GTTACAGTGTACATACTGTGAGGTCCCATGGAGCTTCACTTGCAAAGACACACATGCATGATTGGCTTATACTTCTGCTTCTTGTGGTGATAGAGTTCAT
CCTCTATCTCACGCCTCCATTTTATCGATATGTTGGGAAAGATATGATGACAAATCTTAAATACCCTTTGTTAGATAATACAGTGCCTGTTTGGACTGTC
CCAATATATGCTGTTCTCTTGCCTGTGGTGATATTCCTCTTTGTCTACTTTCGTAGGAGAGACATCTATGATCTTCATCATGCCATACTAGGCCTCTTAT
TCTCCATTCTAGTGACAGCTGTCATTACTGATGCAATAAAAAATGCAGTTGGTCGGCCTCGACCTGATTTCTTTTGGCGTTGCTTTCCTGATGGAAAGGA
TGTTTATGATCAGTTGGGAAATGTGATATGCAATGGTGAGGAAAGTGTCATAAAGGAAGGGCATAAGAGTTTTCCCAGTGGGCACACTTCATGGTCCTTT
GCTGGTCTGGGTTTCCTATCACTCTACTTGTCTGGAAAACTACAAGCGTTTGACCGTGAGGGCCATGTTGCAAAACTATGTATCATCTTCTTACCACTAC
TAGCTGCAAGTCTTGTTGCCATTTCCCGAGTGGATGACTACTGGCATCATTGGCAGGATGTCTTTGCAGGAGGTCTCTTAGGACTAGTAGTGGCAACATT
TTGCTATTTGCAGTTCTTTCCTCCACCATATCACCCTCAAGGTTGGGGACCTTATGCTTACTTTCGGGAACTCGAGGAGTCAGGTGCATATTCACAAGCA
GCTGCTACTGTAAATCCACTCAATGCAGAGCCAATGGATTCACATGTTGAGAGCAAAGAAGATGATAATGATGGATTTTTGGGGCTGCATCTGGCACGTG
ACTCGACTATGCCTCTTGAAGATGTCGAATCTGGGAGGAGGTAA
AA sequence
>Potri.017G119500.3 pacid=42814101 polypeptide=Potri.017G119500.3.p locus=Potri.017G119500 ID=Potri.017G119500.3.v4.1 annot-version=v4.1
MPLWDYGSLSRFKNFRGFFQYKMREVQMREFQLGYSVHTVRSHGASLAKTHMHDWLILLLLVVIEFILYLTPPFYRYVGKDMMTNLKYPLLDNTVPVWTV
PIYAVLLPVVIFLFVYFRRRDIYDLHHAILGLLFSILVTAVITDAIKNAVGRPRPDFFWRCFPDGKDVYDQLGNVICNGEESVIKEGHKSFPSGHTSWSF
AGLGFLSLYLSGKLQAFDREGHVAKLCIIFLPLLAASLVAISRVDDYWHHWQDVFAGGLLGLVVATFCYLQFFPPPYHPQGWGPYAYFRELEESGAYSQA
AATVNPLNAEPMDSHVESKEDDNDGFLGLHLARDSTMPLEDVESGRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02600 ATLPP3, LPP3 lipid phosphate phosphatase 3 ... Potri.017G119500
[exp]
0 1
AT1G44790 ChaC-like family protein (.1) Potri.005G176300
[exp]
2.23 0.7280
AT1G20823 RING/U-box superfamily protein... Potri.007G064401
[exp]
10.39 0.6899
AT3G06170 Serinc-domain containing serin... Potri.008G201900
[exp]
10.67 0.6652
AT1G14685 BBR_BPC BBR/BPC2, ATBPC... basic pentacysteine 2 (.1.2.3) Potri.012G040700
[exp]
13.74 0.6593 GBP.6
AT5G40500 unknown protein Potri.001G344700
[exp]
21.42 0.6083
AT5G04000 unknown protein Potri.006G047800
[exp]
22.44 0.6137
AT1G79870 D-isomer specific 2-hydroxyaci... Potri.001G183700
[exp]
22.49 0.5908
AT4G21760 BGLU47 beta-glucosidase 47 (.1) Potri.001G403900
[exp]
25.09 0.6423
AT1G66430 pfkB-like carbohydrate kinase ... Potri.004G089300
[exp]
30.03 0.5912
AT3G23600 alpha/beta-Hydrolases superfam... Potri.008G201400
[exp]
31.24 0.6092

Potri.017G119500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.