Plant FIBer expression Database

Potri.017G119750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G119700
[exp]
96 / 1e-26 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G119750.1 pacid=42813354 polypeptide=Potri.017G119750.1.p locus=Potri.017G119750 ID=Potri.017G119750.1.v4.1 annot-version=v4.1
ATGAAGCCAAAATCCAAAACCCACACAAAGACTAAAAACTCTAACTCCCTTTGGAAATGGAATACAAATGACAGCAAGAGAAAGAATGGAAATCAATTCC
CAGTACCCGAATTCCTTCAAGACAGTTACAAGAAAGTAGAGGAAACCATTCTGGGTCCTGGGGGCGGTGTTGGAATCGGATGTGGTATTGGAGCAGGCTT
CGGGTTGGTGGGTGGACTCGGGTATGGTAACTGGCCATGGAACAACACCAAGCTAGTTTTTGGGGTTGGTATGGGTTGTGGGGTTGGGTTCGGGTTTGGA
TATGGAAATGGGCTCGGGCATGGTTTTAGTTTAGATTCTTTGGAGTCTTACTTCGAGAAGGCTGGATTCTAA
AA sequence
>Potri.017G119750.1 pacid=42813354 polypeptide=Potri.017G119750.1.p locus=Potri.017G119750 ID=Potri.017G119750.1.v4.1 annot-version=v4.1
MKPKSKTHTKTKNSNSLWKWNTNDSKRKNGNQFPVPEFLQDSYKKVEETILGPGGGVGIGCGIGAGFGLVGGLGYGNWPWNNTKLVFGVGMGCGVGFGFG
YGNGLGHGFSLDSLESYFEKAGF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G119750
[exp]
0 1
AT5G17770 CBR1, ATCBR NADH:cytochrome B5 reductase 1... Potri.009G157000
[exp]
6.48 0.9017
AT5G05800 unknown protein Potri.001G243108
[exp]
6.48 0.9129
AT1G55850 ATCSLE1 cellulose synthase like E1 (.1... Potri.006G004166
[exp]
7.07 0.8904
AT1G26100 Cytochrome b561/ferric reducta... Potri.008G115200
[exp]
9.48 0.8686
AT1G58470 XF41, ATRBP1 RNA-binding protein 1 (.1) Potri.014G012700
[exp]
11.31 0.8913
AT5G62390 ATBAG7 BCL-2-associated athanogene 7 ... Potri.015G126800
[exp]
14.69 0.8071 CBP.1
AT1G27300 unknown protein Potri.001G057700
[exp]
20.73 0.8451
Potri.012G066225
[exp]
20.78 0.8685
AT3G07930 DNA glycosylase superfamily pr... Potri.014G187000
[exp]
20.92 0.8240
AT1G77670 Pyridoxal phosphate (PLP)-depe... Potri.014G124100
[exp]
21.63 0.8866

Potri.017G119750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.