Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56170 126 / 2e-36 CCAAT NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) AT3G48590 125 / 3e-35 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT5G63470 124 / 8e-35 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT1G08970 119 / 3e-33 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT1G54830 118 / 8e-33 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT5G50480 107 / 7e-29 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT5G38140 104 / 7e-28 CCAAT NF-YC12 "nuclear factor Y, subunit C12", nuclear factor Y, subunit C12 (.1) AT5G50470 96 / 4e-24 CCAAT NF-YC7 "nuclear factor Y, subunit C7", nuclear factor Y, subunit C7 (.1) AT5G50490 92 / 3e-23 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT5G27910 89 / 6e-22 CCAAT NF-YC8 "nuclear factor Y, subunit C8", nuclear factor Y, subunit C8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G094900 [exp] 129 / 2e-36 AT1G56170 242 / 5e-81 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.007G070900 [exp] 128 / 2e-36 AT1G56170 235 / 3e-78 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Potri.015G097400 [exp] 123 / 1e-34 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.012G098500 [exp] 121 / 5e-34 AT3G48590 265 / 4e-90 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.008G203500 [exp] 120 / 2e-33 AT1G08970 241 / 2e-80 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.010G032301 [exp] 118 / 1e-32 AT1G08970 237 / 1e-78 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.013G025000 [exp] 118 / 1e-32 AT1G08970 252 / 6e-85 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.005G035800 [exp] 118 / 3e-32 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.001G106900 [exp] 94 / 1e-24 AT1G54830 112 / 6e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016750 [exp] 127 / 1e-35 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10022444 [exp] 122 / 8e-34 AT3G48590 300 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10021934 [exp] 120 / 2e-33 AT1G08970 250 / 5e-84 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10041221 [exp] 120 / 2e-33 AT1G08970 248 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10004468 [exp] 116 / 8e-32 AT1G08970 249 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10029939 [exp] 116 / 8e-32 AT1G08970 243 / 3e-81 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10024515 [exp] 97 / 2e-25 AT1G56170 119 / 6e-35 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Lus10008013 [exp] 93 / 5e-24 AT1G54830 112 / 5e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Lus10026780 [exp] 52 / 8e-08 AT5G19490 189 / 1e-58 Histone superfamily protein (.1) Lus10026118 [exp] 43 / 8e-05 AT3G12480 181 / 9e-56 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF00808 [poplar] [flax] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Potri.017G120000.2 pacid=42813368 polypeptide=Potri.017G120000.2.p locus=Potri.017G120000 ID=Potri.017G120000.2.v4.1 annot-version=v4.1 ATGGATTTGAATCAATCAATAGAACTCGATCTAGCATCAGCGGATCCATCACCACAAGAAATTGAAAATGCCCTGCCCATGAACTCTTCCATGTTGCCTT ATCATCAGACAACCAAAGAGCTGCAACATAAGCAAAATTTGGATGAATTTTGGAATCAACAATTGTTGGAGATTTACAATACTACTGCATCCAAGAGCAA TAATATGTTGCCTTTAGCAAGGATCAAAAGAGTAATGAAATCTGACGGAGATGTCAAGATGATAAGTGCAGAAACTCCTATCTTGTTCTCGAAGGCTTGT GAGCTCTTCATCCTTGAGCTCACTCTTCGTTCATGGCTTCAAACCACTAGTTGTAAGCGTCGAACATTGCAGCGTTGTGACATCTCCAGAGTCATAAGGC AAGAGGACATGCTAAATTTCTTGAATCGTGTCGTTCCTTGTGATCAGAAGAAGGAAGATGAAGTGACCAAGTGCACTGAAGAAATGGAATCTCTTCCTAA CATGCAAATGCCTGCATTTCCTTTCTTGGACCTTAATGGAGAAGTAATGATGGATGAGAACAGCCATGAGGATCCCCAAGAACTCATGATCAAACCACCG ATGCCCTCTTCTGATTTCACTTCGGGATCTGCTTCGAAGTGGGCAAATTGA
AA sequence Show only first row Show all	>Potri.017G120000.2 pacid=42813368 polypeptide=Potri.017G120000.2.p locus=Potri.017G120000 ID=Potri.017G120000.2.v4.1 annot-version=v4.1 MDLNQSIELDLASADPSPQEIENALPMNSSMLPYHQTTKELQHKQNLDEFWNQQLLEIYNTTASKSNNMLPLARIKRVMKSDGDVKMISAETPILFSKAC ELFILELTLRSWLQTTSCKRRTLQRCDISRVIRQEDMLNFLNRVVPCDQKKEDEVTKCTEEMESLPNMQMPAFPFLDLNGEVMMDENSHEDPQELMIKPP MPSSDFTSGSASKWAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Potri.017G120000 [exp]	0	1
AT5G20740			Plant invertase/pectin methyle...		Potri.006G137800 [exp]	2.44	0.9980
AT1G03230			Eukaryotic aspartyl protease f...		Potri.001G240600 [exp]	3.74	0.9874
AT4G24340			Phosphorylase superfamily prot...		Potri.013G082066 [exp]	4.00	0.9970
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Potri.018G131400 [exp]	4.24	0.9967
AT4G24340			Phosphorylase superfamily prot...		Potri.013G082800 [exp]	6.70	0.9957
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.019G024700 [exp]	7.34	0.9956
AT4G24340			Phosphorylase superfamily prot...		Potri.013G081233 [exp]	8.48	0.9950
AT4G24350			Phosphorylase superfamily prot...		Potri.013G080400 [exp]	9.00	0.9935
AT4G25150			HAD superfamily, subfamily III...		Potri.001G191000 [exp]	10.39	0.9734
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014398 [exp]	10.95	0.9924

Compare expression of checked genes

Potri.017G120000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.