Plant FIBer expression Database

Potri.017G120201 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G120201.1 pacid=42813469 polypeptide=Potri.017G120201.1.p locus=Potri.017G120201 ID=Potri.017G120201.1.v4.1 annot-version=v4.1
ATGACTTTCTTCATCCGGTTTCCTGAAGAAAAAGTAGAAGAACTGCTGCATAACCATCTCCACCCTCTCTCAGCAGACAGAGCATTTTATGCAACCTTGA
GGGGTTGGCGTAGCGGATGCCGTCTGGGTTCTGACGGTTTGCTCCCTTCCAGTCTCAAATTCGAGTCTGCTTCCCGCAGCGAGACCATGGACTGCATGCT
GTGTACGTCGATAACAACACGTACGGTGAGGACATTAGAGAGATTTATATGGTGA
AA sequence
>Potri.017G120201.1 pacid=42813469 polypeptide=Potri.017G120201.1.p locus=Potri.017G120201 ID=Potri.017G120201.1.v4.1 annot-version=v4.1
MTFFIRFPEEKVEELLHNHLHPLSADRAFYATLRGWRSGCRLGSDGLLPSSLKFESASRSETMDCMLCTSITTRTVRTLERFIW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G120201
[exp]
0 1
AT3G04670 WRKY ATWRKY39, WRKY3... WRKY DNA-binding protein 39 (.... Potri.005G055300
[exp]
9.94 0.7351 WRKY39.1
AT3G27010 TCP ATTCP20, PCF1, ... ARABIDOPSIS THALIANA TEOSINTE ... Potri.001G060000
[exp]
10.48 0.7587
AT1G03610 Protein of unknown function (D... Potri.017G152601
[exp]
19.18 0.7519
AT4G31805 WRKY family transcription fact... Potri.018G019400
[exp]
21.02 0.6128
AT1G30220 ATINT2 ARABIDOPSIS THALIANA INOSITOL ... Potri.004G133340
[exp]
21.35 0.7329
AT4G02590 bHLH bHLH059, UNE12 unfertilized embryo sac 12, ba... Potri.005G053500
[exp]
23.66 0.7269
AT1G56220 Dormancy/auxin associated fami... Potri.005G024250
[exp]
26.72 0.6767
AT1G25420 Regulator of Vps4 activity in ... Potri.010G124100
[exp]
29.39 0.7161
AT1G66920 Protein kinase superfamily pro... Potri.010G118300
[exp]
30.74 0.6821
AT5G43990 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-dom... Potri.014G192500
[exp]
33.91 0.7326

Potri.017G120201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.