Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03420 289 / 6e-101 Ku70-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G339900 [exp] 348 / 2e-124 AT3G03420 295 / 2e-103 Ku70-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014579 [exp] 308 / 2e-108 AT3G03420 300 / 3e-105 Ku70-binding family protein (.1) Lus10032105 [exp] 214 / 2e-72 AT3G03420 222 / 1e-75 Ku70-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF09768 [poplar] [flax] Peptidase_M76 Peptidase M76 family
Representative CDS sequence Show only first row Show all	>Potri.017G120800.1 pacid=42813645 polypeptide=Potri.017G120800.1.p locus=Potri.017G120800 ID=Potri.017G120800.1.v4.1 annot-version=v4.1 ATGGCGGAGGAACCCGGCACCGCACCTGGGTCCGGCAGCCGGACAGTGAAGGAATGCGAAGATATGATTCGACGGAGTTTCCGGACTCCAATGGTGAGAT TTTTTAGGGAGAATTTGGAGAAAGCAGGGTGTGGTGTTAGTGAAAATTTCTTCAAGGCTGTTAATTGTGATAAGAGTATTGCTGGCGGTTATGTTCGCGG AAAAGGGATAATGGTGTGTAGTAATCACATGAACATTCAAGATGACGTAAACCAAGTTATTGCACATGAGTTGATTCATGCTTATGATGACTGTCAGGCT GCAAACTTGGACTGGGCTGATTGTGCGCATCATGCCTGTAGTGAGATTCGTGCTGGACATTTAAGTGGTGATTGTCATTATAAACGGGAGTTGCTGCGGG GTTATATCAAATTAAGAGGTCATGAACAAGAATGTGTGAGAAGGAGAGTTATGAAGTCAGTGATTGCCAACCCGCATTGCTCAGAAGCAGCTGCAAGGGA TGCCATGGAAGCTGTATGGGATGTCTGTTACAATGATACACGGCCCTTTGACAGAGCTCCTTGA
AA sequence Show only first row Show all	>Potri.017G120800.1 pacid=42813645 polypeptide=Potri.017G120800.1.p locus=Potri.017G120800 ID=Potri.017G120800.1.v4.1 annot-version=v4.1 MAEEPGTAPGSGSRTVKECEDMIRRSFRTPMVRFFRENLEKAGCGVSENFFKAVNCDKSIAGGYVRGKGIMVCSNHMNIQDDVNQVIAHELIHAYDDCQA ANLDWADCAHHACSEIRAGHLSGDCHYKRELLRGYIKLRGHEQECVRRRVMKSVIANPHCSEAAARDAMEAVWDVCYNDTRPFDRAP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03420			Ku70-binding family protein (....		Potri.017G120800 [exp]	0	1
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Potri.018G030900 [exp]	11.26	0.7402
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.009G160600 [exp]	12.96	0.6784
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Potri.007G070000 [exp]	15.93	0.7125
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Potri.008G156500 [exp]	18.57	0.6845
AT1G22520			Domain of unknown function (DU...		Potri.013G105766 [exp]	19.89	0.6999
AT5G37590			Tetratricopeptide repeat (TPR)...		Potri.004G085200 [exp]	21.16	0.6328
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.016G091200 [exp]	22.75	0.6599
AT4G22720			Actin-like ATPase superfamily ...		Potri.007G129400 [exp]	25.61	0.6252
AT3G01130			unknown protein		Potri.004G164066 [exp]	35.32	0.6614
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.005G025100 [exp]	36.18	0.6648	Pt-RPT5.1

Compare expression of checked genes

Potri.017G120800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.