Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24960 42 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172900 [exp] 54 / 5e-08 AT2G24960 96 / 1e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014257 [exp] 67 / 4e-12 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025958 [exp] 56 / 1e-08 AT2G24960 102 / 4e-24 unknown protein Lus10016838 [exp] 52 / 1e-07 AT2G24960 71 / 4e-14 unknown protein Lus10026250 [exp] 45 / 6e-05 AT2G24960 750 / 0.0 unknown protein Lus10024453 [exp] 41 / 0.0002 AT5G05800 50 / 7e-08 unknown protein Lus10007443 [exp] 41 / 0.0002 AT5G05800 50 / 4e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G120900.1 pacid=42813797 polypeptide=Potri.017G120900.1.p locus=Potri.017G120900 ID=Potri.017G120900.1.v4.1 annot-version=v4.1 ATGGGGGGACATAATAATGTTACTACCGGAGAAGATATGAGATGGCCTGAAAAAAATGAGGATGCTTTTTTGGCAAATTTATATGAGAGAGTCAAAAGGC ATCCAAATGGAACACCTAGTTTTAAGCAAGTGGATTGGAATGAGATAGATGAGGAATTATTTTCAGCTATTGGGCAAAAATATGGAGCAGAAAGATTGCA AGGAAAGTACAACCGTCTAAGATTGAAACATCGGCAATTTTCTGACTTGATAAGTCATACTGGAGTTACATATAGTTCAAGCTCAAATCAAGTATATGCC ACAGAAGAAGTTTGGAAAATGTTCAAGAAGAAGCATAAGAACTATATCACATTTAAGTCAAAGGGATGCCGCAATTATGAAATGCTTGGTCAAATATTTA ATAATTCTTCAACCCATCATGCATCTACTCAATTACCTCTTAATTCTGATGGAAATCACCAAAATGAGGAACAATTTTTTAGCCAAGGGGTTCATGTCAT TGAAGGGGAAAAGTCTTGTGCTGGGAGTTCTAGAGGAAAACGTCCAATTGATGACTATCTAGCTGGCTGCAATTGTGTTAACAAGGAAACCAAGCTTGAA AATTTTGATTTCTGTTTGGAAATTCTGGCATCTTCTCTAAGTGCTAGAGCTGAAAGAGATTTAGCTAAAGCAAAAAAGTATAAAGAAATGCCCGAGCAAG CTACAAGGGCTCCATACTCAATCGATGAGTGCATGGATGAACTGGAGAATCTTGATGATGTATCTGATACTTCTTATATCAAAGCTCTTGAAAAGTTTAA AGATCCGGATTGGAGAATAATGTTTGTGAAAATGTCTCTTGTTAGAAAGAAGTCTTGGCTCAAGAGCCTAGAATGA
AA sequence Show only first row Show all	>Potri.017G120900.1 pacid=42813797 polypeptide=Potri.017G120900.1.p locus=Potri.017G120900 ID=Potri.017G120900.1.v4.1 annot-version=v4.1 MGGHNNVTTGEDMRWPEKNEDAFLANLYERVKRHPNGTPSFKQVDWNEIDEELFSAIGQKYGAERLQGKYNRLRLKHRQFSDLISHTGVTYSSSSNQVYA TEEVWKMFKKKHKNYITFKSKGCRNYEMLGQIFNNSSTHHASTQLPLNSDGNHQNEEQFFSQGVHVIEGEKSCAGSSRGKRPIDDYLAGCNCVNKETKLE NFDFCLEILASSLSARAERDLAKAKKYKEMPEQATRAPYSIDECMDELENLDDVSDTSYIKALEKFKDPDWRIMFVKMSLVRKKSWLKSLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24960			unknown protein		Potri.017G120900 [exp]	0	1
AT1G09157			Protein of unknown function (D...		Potri.010G168400 [exp]	3.31	0.7416
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Potri.005G021800 [exp]	5.19	0.7467
AT5G23760			Copper transport protein famil...		Potri.012G141500 [exp]	7.07	0.7214
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.011G023401 [exp]	8.71	0.7925
AT4G39140			RING/U-box superfamily protein...		Potri.006G063100 [exp]	16.61	0.7258
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.009G067400 [exp]	21.33	0.7401
AT5G40270			HD domain-containing metal-dep...		Potri.009G147750 [exp]	23.87	0.7738
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Potri.018G016200 [exp]	24.39	0.7081
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G129400 [exp]	25.37	0.7657	CYP89A27P
AT1G76270			O-fucosyltransferase family pr...		Potri.005G249900 [exp]	25.69	0.7443

Compare expression of checked genes

Potri.017G120900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.