Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SGA902
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66740 285 / 4e-99 AtSP7, SGA2, ASF1A ANTI- SILENCING FUNCTION 1A, ASF1 like histone chaperone (.1) AT5G38110 285 / 1e-98 SGA1, SGA01, ASF1B anti- silencing function 1b (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G094400 [exp] 348 / 2e-124 AT5G38110 294 / 2e-102 anti- silencing function 1b (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033579 [exp] 301 / 1e-105 AT5G38110 295 / 2e-102 anti- silencing function 1b (.1) Lus10017622 [exp] 301 / 3e-105 AT1G66740 291 / 2e-101 ANTI- SILENCING FUNCTION 1A, ASF1 like histone chaperone (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF04729 [poplar] [flax] ASF1_hist_chap ASF1 like histone chaperone
Representative CDS sequence Show only first row Show all	>Potri.017G121100.2 pacid=42813652 polypeptide=Potri.017G121100.2.p locus=Potri.017G121100 ID=Potri.017G121100.2.v4.1 annot-version=v4.1 ATGAGTGCAGTGAATCTTACTAACGTTACCGTACTAGATAATCCGGCGCCGTTTCCGTCTCCCTTTCAGTTCGAGATCTCATACGAGTGCTTGACTCCTC TTAAAGACGATTTGGAATGGAAACTAATCTACGTGGGGTCTGCTGAGGATGAAACATATGATCAACTATTGGAGAGTGTACTTGTTGGGCCTGTCAATGT TGGAAATTATCGTTTTGTCTTACAGGCAAACCCACCAGATCCATCAAAGATTCGTGAAGAAGATATCATTGGTGTCACAGTACTTTTGTTGACATGCTCT TATTTAGGTCAGGAATTTGTTCGAGTTGGCTACTATGTGAACAATGATTACGAAGATGAGCAGCTTAGAGAGGAACCTCCACCTAAAGTGTTGATTGATA AGGTCCAAAGAAACATCCTATCTGATAAACCCAGGGTTACAAAGTTCCCTATCAATTTTTATCCTGAAAATACTGAGGCAGCAGAGGAACCCCCTGAGAA TGATCAACCTGCTAAAACTGATGGAAATGAAGAACAATTGCCTGCTTCTCCACATCATGCTTTAGATAAAGAGGGACCTTGA
AA sequence Show only first row Show all	>Potri.017G121100.2 pacid=42813652 polypeptide=Potri.017G121100.2.p locus=Potri.017G121100 ID=Potri.017G121100.2.v4.1 annot-version=v4.1 MSAVNLTNVTVLDNPAPFPSPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQANPPDPSKIREEDIIGVTVLLLTCS YLGQEFVRVGYYVNNDYEDEQLREEPPPKVLIDKVQRNILSDKPRVTKFPINFYPENTEAAEEPPENDQPAKTDGNEEQLPASPHHALDKEGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66740		AtSP7, SGA2, AS...	ANTI- SILENCING FUNCTION 1A, A...		Potri.017G121100 [exp]	0	1	SGA902
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Potri.002G062400 [exp]	13.07	0.7526	Pt-RAB7.2
AT3G03000			EF hand calcium-binding protei...		Potri.003G095700 [exp]	14.56	0.7575
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Potri.006G161600 [exp]	24.00	0.7297	Pt-ATRPABC24.1
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Potri.004G094400 [exp]	25.15	0.6631
AT3G51010			unknown protein		Potri.007G018300 [exp]	29.46	0.7240
AT3G49710			Pentatricopeptide repeat (PPR)...		Potri.014G012500 [exp]	35.49	0.6900
AT5G53280		PDV1	plastid division1 (.1)		Potri.012G032200 [exp]	37.45	0.7021
AT5G27430			Signal peptidase subunit (.1)		Potri.006G234600 [exp]	48.46	0.7154	SPP.3
AT3G52040			unknown protein		Potri.001G262000 [exp]	56.92	0.7168
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.019G111200 [exp]	73.32	0.7134	Pt-ATHM1.3

Compare expression of checked genes

Potri.017G121100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.