Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 462 / 1e-144 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 446 / 2e-135 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 270 / 2e-76 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G53350 263 / 1e-73 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 257 / 1e-71 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 249 / 5e-69 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G48620 248 / 3e-68 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 216 / 6e-58 NB-ARC domain-containing disease resistance protein (.1) AT1G58848 217 / 1e-57 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 217 / 1e-57 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G121500 [exp] 1912 / 0 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 1187 / 0 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 1134 / 0 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 1115 / 0 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G138100 [exp] 1113 / 0 AT3G14470 397 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.017G136266 [exp] 1098 / 0 AT3G14470 412 / 2e-126 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 1094 / 0 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G133666 [exp] 962 / 0 AT3G14470 416 / 7e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.017G133600 [exp] 955 / 0 AT3G14470 424 / 4e-132 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 569 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 563 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 553 / 1e-175 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 543 / 6e-174 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 530 / 2e-167 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 516 / 1e-161 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 514 / 1e-159 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 501 / 9e-157 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 457 / 6e-140 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10003571 [exp] 420 / 5e-130 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G121700.1 pacid=42814421 polypeptide=Potri.017G121700.1.p locus=Potri.017G121700 ID=Potri.017G121700.1.v4.1 annot-version=v4.1 ATGGCTGAGGCAACTATTTCTGCACTTGTTAGCACCGTCTTGGGGAACTTGAACACACTTGTACTTGAAGAGCTTGGACTTGTTTTTGGCATCCAGACCG AGTTTGAGAAACTCAAGCGCACCTTCATGACGGTTCAAGCTGTCCTCAAGGATGCTGAGGAGAAGCAGTGGAAAGATGAGGCAATCAGGATTTGGCTGAC AGACCTCAAAGATGCTGCCTATGATGCTGATGATGTGCTGGATGAGTTCGCTATTGAAGCTCAGAGGCGCAGACAGCGAGGGGGTCTTAAAAACCGAGTA AGGTCTTTGTTTTCTCTTCATCAGAATCCACTTGTTTTTCGATTGAAAATGGCTCATAAGGTAAAGAATGTAAGAGAAAAGCTTGATTCCATTGCCAATG AGAAAAATAAGTTCAGACTAACAGAGGGAGTTGGAGAGAACGAAGCTGATAGCTTCGATTGGCGGATAACTTGCTCGCTTGTTAACGAATCAGAAATCTA TGGAAGAGACAAGGAAAAAGAAGAGCTGATCAGTTTGTTGCTCGCCAATTCAGATGACCTCTCTGTCTGTGCAGTATGTGGCATGGGGGGGCTGGGGAAG ACAGCACTTGCTCAATTTGTCTACAACGATGCAAGTGTAAAAGGGCATTTTGATTTGAGTATCTGGGTTTGCGTATCTGTTGATTTCGACATAAGGAGAC TATCAAGAGCTATCATAGAGTCCATTGAAGGCAACCCTTGTACCATTCAAGAGATGGACACTTTGCAACGACGCCTCCAAGAAAAGTTGATTGGAAGGAG GTTTTTGCTTGTGTTGGATGATGTTTGGGATCATTACCATGAAAAATGGAATGCATTGAAAGATGCTTTGAGAGTTGGAGCTAGAGGATGTGCTATTCTA ATAACAACTCGTCTAAAGCAGGTTGCTGATAAAATGGCTACTATTCCTGTTCACCTAATGGGAAGATTGTCGGAAGATGATTCTTGGCTTCTGTTTGAGC GACTTGCATTTGGGATGAGAAGAAGGGAGGATTATGTGCACTTAGAAAGTATTGGAAAGGCGATAGTCAATAAGTGCAGTGGCGTTCCTTTAGCTCTAAA GGCATTGGGGAGCTTGATGCGCTTCAAGAGAAATGAACGAGAGTGGTTATCTGTCAAAGAAAGTGAGATTTGGAATCTACCAGACGAAGGTGGCACAATT TTACCTGCCTTGAAGTTAAGTTATAACAATTTGCCACCACATTTGAAACAATGCTTTGGATTTTGCTGTATGTTTCCGAAGGATTATGTCATGAAGAAAG ACGAGTTAGTAAAGCTATGGATGGCCAATGGATTTATTGATCCTGCAGGGCAAATGGATTTGCATGAGACAGGTTACGAGATTTTTGATGACTTGGTTGG GAGATCATTTTTTCAGGAGTTCAAGGAGGATGGCTTCGGAAACATAACTTGCAAAATGCATGATCTTATCCATGATCTTGCAAAATCAGTTATGATAGAA GAATGCTATTTGATCGAGAAGAATAGGAGACCTAGAATTCCTAAGACAGTTCGTCACATGACTTTTCTTGGTAGAAGTCTTTGTTATTATGACAAGGACC TTGTCAAAGTGCAATCATTGCGGTCTCTGATATCCATTCAGGTCGATTATTACCGGCGTGGTGCTCTTTTATTCAAGGTGTCTTCACAAAAGAAACTACG GACGTTGAGTTTAAGCAATTTCTGGTTTGTGAAATTTCCGGAGCCGATTGGTAATTTGCAACATCTAAGATATCTAGACGTCTCTTGTTCTCTTATCCAA AAACTGCCTGAATCAATCAGCTCTCTTCAAAACTTGCAGACCCTAAATTTGAGTTACTGCCCTCTGCTTTATATGCTTCCAAAAAGGATGAAGGACATGA AAAGTCTCATGTATCTTGACCTCACACGTTGTGATGCGCTTCAATGTATGCCTTCAGGGATGGGACAACTGGCTTGTCTGCGAAAGCTAGGTATGTTCAT TGTGGGTAAAGAGGCTGGTCATCACATAGGGGAGCTGCAAAGACTGAATTACATTGGGGGTGATTTGAGCATCAAGGATTTAGGTAACGTCCAAGGTTTT ACAGATGCACAAAATGCTAATTTGATGAGGAAGACAAATCTTCAATCACTGAGTTTGTCTTGGCGAGAAGACAAAAACAGCATAATCAGTGAGGCAAACA GTGAAGATGTTCTTTGTGCTCTTGAACCCCATTCTCATATGAAGAAGTTAGAGATAAGCGGATATCGAGGATCCAAATTTCCAGATTGGATGATGGAGTT GCGTCTACCAAACCTAGTGGAGATCTCACTAGAATCGTGCATGAATTGTGAACATCTTCCTCCTTTTGGGAAACTGCGGTTTCTTAAGCATCTTCAATTG AAGAGAATGGACACTGTGAAGTGTATTGGCAGTGAGATGTATGGAGAGGGAGAGAATCCATTTCCATCATTAGAGAGGTTGACTTTGGGTCCAATGATGA ACTTAGAGGAGTGGGAAACAAATACCATGGGTGGAAGGGAAATTTTCACTTGCCTTGATGAATTACAGATCAGAAAATGCCCCAAGCTGGTCGAGTTACC AATTATTCCGTCGGTGAAACATTTAACTATTGAGGACTGCACTGTAACTTTGCTGAGGTCAGTTGTGAATTTCACTTCTATTACCTACCTTCGAATTGAG GGCTTCGATGAATTGGCAGTTCTTCCTGATGGACTGTTGCAAAACCATACATGCCTTCAAAAGCTGTCAATTACGAAGATGAGAAGCCTAAGGTCGCTGT CAAATCAGCTAAATAACCTATCTTCTCTTAAGCATTTGGTTATTATGAATTGTGATAAACTTGAAAGCTTCCCAGAAGGTGTCCAGAACCTCAATTCTTT GGAGCTGTTAAGTATACATGGAATGCCAAAAATCACTGCACTGTCTGTTTTACCTTCATCTCTTGCTACCTTGCGGATTCTAAATTGTGAAGAACTTACG TCTCTATCTGAGGGACTGCAATACCTGACAGCACTCAAGGATTTGGAACTTTCTAGATGTGTAAAGTTAGATTCCTTGCCACAGAGAATACGACATCTCA CTTCTCTCCAGTCTCTAACAATCTCTTGTTGTACGGAAGTATCTTGTCTTCCGAATCAGATACGGCATCTCACATCCCTTTCAAGACTGCATATCCATGG ATGCTCTAATTTGATGTCTTTGCCAGAAGGGATAAGGTATCTCGAAATGCTCAGAGAGTTGGAAATTGCAAGATGTCCAAATGTGGAGAGACGGTGCAAG AAAGAAAAAGGAAAGGACTGGCCTAAGATAGCTCACATCCCTACCATCATCATTAATAACCAAGTAGTACAGTCCTCGGAGACCTGA
AA sequence Show only first row Show all	>Potri.017G121700.1 pacid=42814421 polypeptide=Potri.017G121700.1.p locus=Potri.017G121700 ID=Potri.017G121700.1.v4.1 annot-version=v4.1 MAEATISALVSTVLGNLNTLVLEELGLVFGIQTEFEKLKRTFMTVQAVLKDAEEKQWKDEAIRIWLTDLKDAAYDADDVLDEFAIEAQRRRQRGGLKNRV RSLFSLHQNPLVFRLKMAHKVKNVREKLDSIANEKNKFRLTEGVGENEADSFDWRITCSLVNESEIYGRDKEKEELISLLLANSDDLSVCAVCGMGGLGK TALAQFVYNDASVKGHFDLSIWVCVSVDFDIRRLSRAIIESIEGNPCTIQEMDTLQRRLQEKLIGRRFLLVLDDVWDHYHEKWNALKDALRVGARGCAIL ITTRLKQVADKMATIPVHLMGRLSEDDSWLLFERLAFGMRRREDYVHLESIGKAIVNKCSGVPLALKALGSLMRFKRNEREWLSVKESEIWNLPDEGGTI LPALKLSYNNLPPHLKQCFGFCCMFPKDYVMKKDELVKLWMANGFIDPAGQMDLHETGYEIFDDLVGRSFFQEFKEDGFGNITCKMHDLIHDLAKSVMIE ECYLIEKNRRPRIPKTVRHMTFLGRSLCYYDKDLVKVQSLRSLISIQVDYYRRGALLFKVSSQKKLRTLSLSNFWFVKFPEPIGNLQHLRYLDVSCSLIQ KLPESISSLQNLQTLNLSYCPLLYMLPKRMKDMKSLMYLDLTRCDALQCMPSGMGQLACLRKLGMFIVGKEAGHHIGELQRLNYIGGDLSIKDLGNVQGF TDAQNANLMRKTNLQSLSLSWREDKNSIISEANSEDVLCALEPHSHMKKLEISGYRGSKFPDWMMELRLPNLVEISLESCMNCEHLPPFGKLRFLKHLQL KRMDTVKCIGSEMYGEGENPFPSLERLTLGPMMNLEEWETNTMGGREIFTCLDELQIRKCPKLVELPIIPSVKHLTIEDCTVTLLRSVVNFTSITYLRIE GFDELAVLPDGLLQNHTCLQKLSITKMRSLRSLSNQLNNLSSLKHLVIMNCDKLESFPEGVQNLNSLELLSIHGMPKITALSVLPSSLATLRILNCEELT SLSEGLQYLTALKDLELSRCVKLDSLPQRIRHLTSLQSLTISCCTEVSCLPNQIRHLTSLSRLHIHGCSNLMSLPEGIRYLEMLRELEIARCPNVERRCK KEKGKDWPKIAHIPTIIINNQVVQSSET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.017G121700 [exp]	0	1
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.018G006300 [exp]	2.23	0.8423	Pt-FZF.1
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.001G263400 [exp]	3.00	0.8086
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013501 [exp]	3.46	0.8293
AT2G18160	bZIP	GBF5, ATBZIP2	G-BOX BINDING FACTOR 5, basic ...		Potri.005G119300 [exp]	5.00	0.8147
					Potri.010G061000 [exp]	6.92	0.8163
					Potri.018G123400 [exp]	7.74	0.8196
AT1G75388		CPuORF5	conserved peptide upstream ope...		Potri.005G119400 [exp]	15.09	0.8131
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G113125 [exp]	18.00	0.8013
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Potri.003G126900 [exp]	18.33	0.7733
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Potri.002G226700 [exp]	19.07	0.7936

Compare expression of checked genes

Potri.017G121700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.