Plant FIBer expression Database

Potri.017G122100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G115900
[exp]
51 / 7e-09 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G122100.2 pacid=42813371 polypeptide=Potri.017G122100.2.p locus=Potri.017G122100 ID=Potri.017G122100.2.v4.1 annot-version=v4.1
ATGGCTTCTCCTCTATCTAGACTACCTTCTCACCTGTCTTTGCATATCAGACCATCTTACAAGCGTATTACTGGGGCGGCCATGCAAGTTAGAGCTCAAA
GATTTGGAGATGAAGCAGGAAAGTCAAGTAACAATGTTGATGCAAATCTGAGTGTTCTAAGAGAAAGGATAGAGGAAGTCAAGATCAGGGAGAGACTCGA
GAGGGGTTGCAGGTGTGAATATGGCTGGAATTATGAAACTGGATATAACAATAAGCTAAGAAAAGAAGTGGGATTGCAATATCATCATCACTTCGTTGAT
CTTGTAGGTTTGGTTTGTGGTACTATAGGGTTCACTTTTATTGCTGGCGCTCTTTTCCTTTCTCTTGTTTCCCTCTTTGTGCATTTGAGTCAATAA
AA sequence
>Potri.017G122100.2 pacid=42813371 polypeptide=Potri.017G122100.2.p locus=Potri.017G122100 ID=Potri.017G122100.2.v4.1 annot-version=v4.1
MASPLSRLPSHLSLHIRPSYKRITGAAMQVRAQRFGDEAGKSSNNVDANLSVLRERIEEVKIRERLERGCRCEYGWNYETGYNNKLRKEVGLQYHHHFVD
LVGLVCGTIGFTFIAGALFLSLVSLFVHLSQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G122100
[exp]
0 1
AT1G79580 NAC ANAC033, SMB, N... NAC (No Apical Meristem) domai... Potri.008G080000
[exp]
1.41 0.9745
AT4G27745 Yippee family putative zinc-bi... Potri.014G101600
[exp]
2.00 0.9686
AT1G18590 SOT17, ATSOT17,... ARABIDOPSIS SULFOTRANSFERASE 5... Potri.011G048400
[exp]
2.00 0.9730
AT1G17020 ATSRG1, SRG1 senescence-related gene 1 (.1) Potri.009G022800
[exp]
2.64 0.9612
AT1G79580 NAC ANAC033, SMB, N... NAC (No Apical Meristem) domai... Potri.010G176600
[exp]
3.46 0.9703
AT3G20898 unknown protein Potri.006G053600
[exp]
4.69 0.9523
AT1G51190 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA... Potri.003G205700
[exp]
6.00 0.9612 RAP23
Potri.018G119300
[exp]
7.74 0.9428
AT3G51680 AtSDR2 short-chain dehydrogenase/redu... Potri.019G125600
[exp]
7.74 0.9551
AT5G57620 MYB ATMYB36 myb domain protein 36 (.1) Potri.018G095900
[exp]
9.79 0.9603

Potri.017G122100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.