Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77840 457 / 5e-159 Translation initiation factor IF2/IF5 (.1) AT1G36730 288 / 6e-93 Translation initiation factor IF2/IF5 (.1) AT5G20920 61 / 3e-10 EIF2 BETA, EMB1401, EIF2BETA embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) AT1G65220 46 / 5e-05 ARM repeat superfamily protein (.1) AT5G36230 45 / 9e-05 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093600 [exp] 649 / 0 AT1G77840 514 / 0.0 Translation initiation factor IF2/IF5 (.1) Potri.004G112200 [exp] 589 / 0 AT1G77840 493 / 2e-173 Translation initiation factor IF2/IF5 (.1) Potri.013G158400 [exp] 60 / 5e-10 AT5G20920 396 / 7e-141 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.019G131200 [exp] 60 / 6e-10 AT5G20920 399 / 7e-142 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.019G053600 [exp] 45 / 7e-05 AT5G36230 694 / 0.0 ARM repeat superfamily protein (.1) Potri.013G085600 [exp] 45 / 8e-05 AT5G36230 687 / 0.0 ARM repeat superfamily protein (.1) Potri.005G045200 [exp] 44 / 0.0002 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004057 [exp] 527 / 0 AT1G36730 505 / 4e-178 Translation initiation factor IF2/IF5 (.1) Lus10002283 [exp] 520 / 0 AT1G36730 505 / 6e-178 Translation initiation factor IF2/IF5 (.1) Lus10000448 [exp] 408 / 1e-140 AT1G36730 423 / 7e-147 Translation initiation factor IF2/IF5 (.1) Lus10010981 [exp] 280 / 1e-93 AT1G36730 282 / 3e-95 Translation initiation factor IF2/IF5 (.1) Lus10010980 [exp] 212 / 2e-65 AT1G36730 184 / 2e-55 Translation initiation factor IF2/IF5 (.1) Lus10007559 [exp] 58 / 5e-09 AT5G20920 385 / 3e-136 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10012186 [exp] 47 / 2e-05 AT5G20920 373 / 3e-131 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10029667 [exp] 45 / 3e-05 AT5G36230 320 / 1e-109 ARM repeat superfamily protein (.1) Lus10042703 [exp] 45 / 6e-05 AT5G36230 631 / 0.0 ARM repeat superfamily protein (.1) Lus10018182 [exp] 45 / 0.0001 AT5G36230 623 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01873 [poplar] [flax] eIF-5_eIF-2B Domain found in IF2B/IF5 CL0020 [poplar] [flax] TPR PF02020 [poplar] [flax] W2 eIF4-gamma/eIF5/eIF2-epsilon
Representative CDS sequence Show only first row Show all	>Potri.017G122200.4 pacid=42814501 polypeptide=Potri.017G122200.4.p locus=Potri.017G122200 ID=Potri.017G122200.4.v4.1 annot-version=v4.1 ATGGCATTGCAAAACATTGGTGCTTCAAACAGCGATGATGCCTTCTATAGGTATAAAATGCCCAAGATGGTTACCAAAGTTGAGGGCCGAGGAAATGGCA TCAAGACAAATATTGTCAACATGGTTGACATTGCAAAGGCTTTGGCAAGGCCAGCTTCTTACACTACAAAGTATTTTGGTTGTGAGCTTGGTGCGCAATC CAAGTTTGATGAGAAAACTGGGACTTCTCTTGTCAATGGTTCTCATGAAACTATTAAACTTGCTGGGCTTCTTGAGAACTTCATAAAGAAATATGTTCAG TGTTATGGCTGTGGAAATCCTGAGACTGAGATAATCATCACCAAAAACCAGATGCTCCAGCTAAAATGCGCTGCATGTGGTTTTGTGTCTGATGTAGATA TGAGGGACAAGCTCACGTCTTTCATTCTGAAGAACCCTCCTGAATCAAAGAAGGGATCAAAGGAGAAGAAGGCATTGAGGAGGGCAGAGAAAGAGCGGCT CAAGGAAGGTGAAGCTGCTGACGAGGAACTGAAGAAGCTGAAGAAAGAAGGTAAGAAGAAGGGATCTTCTTCAAAGGATGTCCCTCCAAAAGCTAGCTCT ACAAAGAAGAAAGCACACGGCTCTGATGAGGAACGAATCTCGCCAACTCATAGCCAGGTTGATGAGAAGGAAGATGTTGATGACAACGATGATGACGATG TCCAGTGGCAAACTGATACATCTCTCGAGGCAGCTCGCCAACGCATCCAAGAACAGTTGAGTGCTGCGACAGCAGATATGGTCGTGCTTTCAACAGATGA GACAGAAAAGAAGGCAAAGGCAAAGGCATCCAGCAAAGAAAATGGCAGTCCAAAAAGTGCTTCACCAGCTCGGGAGGAAAAACCAAAACCTGATAATGGG AGCTCAAGTACTCATGAAACTCTTGTCATTGAGATAAAGGAAAACCTGAAGAAAGGAGTTTCTGCAAGCCAGTTGAGGTCCACACTCAGTTCACTCAATG GATCTGCCCAGGAAAAGATTGATGCTCTGTTTGAAGCATTGTTTGAGGGTGTTGTTAAAGGATTTGTGAAGGAGGTTGACAAGAAGAAGAACTATCTGGC TGCTGCTGTTGCTCAGGATGAGAGATCACAGTTGCTTCTACTTCGAGCAATTGAAGCATTCTGTATTAAGTCTAGCTCAAGTGCACTGAGGGAAGTGGGT CTTGTCCTGAAAGCACTCTATGATGCTGATGTCCTGGAGGAAGAGTGCATTGTGCACTGGTATCAAGAGGGGCTAGCGAGAGGCAACAAGGATTCTCAGA TTTGGAAGAATGTGGAGCCCTTCATTAAATGGCTCCAGAGCGCTGAATCCGAATCTGAGGAAGAATAA
AA sequence Show only first row Show all	>Potri.017G122200.4 pacid=42814501 polypeptide=Potri.017G122200.4.p locus=Potri.017G122200 ID=Potri.017G122200.4.v4.1 annot-version=v4.1 MALQNIGASNSDDAFYRYKMPKMVTKVEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSLVNGSHETIKLAGLLENFIKKYVQ CYGCGNPETEIIITKNQMLQLKCAACGFVSDVDMRDKLTSFILKNPPESKKGSKEKKALRRAEKERLKEGEAADEELKKLKKEGKKKGSSSKDVPPKASS TKKKAHGSDEERISPTHSQVDEKEDVDDNDDDDVQWQTDTSLEAARQRIQEQLSAATADMVVLSTDETEKKAKAKASSKENGSPKSASPAREEKPKPDNG SSSTHETLVIEIKENLKKGVSASQLRSTLSSLNGSAQEKIDALFEALFEGVVKGFVKEVDKKKNYLAAAVAQDERSQLLLLRAIEAFCIKSSSSALREVG LVLKALYDADVLEEECIVHWYQEGLARGNKDSQIWKNVEPFIKWLQSAESESEEE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77840			Translation initiation factor ...		Potri.017G122200 [exp]	0	1
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Potri.018G104900 [exp]	10.34	0.7290	Pt-SKIP1.1
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Potri.005G082100 [exp]	13.07	0.6808
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Potri.008G159000 [exp]	17.77	0.6969	APS1.2
AT5G19400		SMG7	Telomerase activating protein ...		Potri.006G038500 [exp]	24.00	0.6994
AT2G05710		ACO3	aconitase 3 (.1)		Potri.002G229200 [exp]	24.85	0.6942
AT5G17380			Thiamine pyrophosphate depende...		Potri.004G094600 [exp]	25.29	0.6826
AT5G19380		CLT1	CRT (chloroquine-resistance tr...		Potri.009G069400 [exp]	42.42	0.6796
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Potri.019G018500 [exp]	52.20	0.6414
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Potri.002G240800 [exp]	56.54	0.6420
AT2G30020			Protein phosphatase 2C family ...		Potri.010G187000 [exp]	59.59	0.6491

Compare expression of checked genes

Potri.017G122200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.