Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71090 579 / 0 Auxin efflux carrier family protein (.1) AT5G01990 295 / 7e-96 Auxin efflux carrier family protein (.1) AT1G76520 199 / 3e-59 Auxin efflux carrier family protein (.1.2) AT2G17500 192 / 1e-56 Auxin efflux carrier family protein (.1.2.3.4) AT1G20925 190 / 5e-55 Auxin efflux carrier family protein (.1) AT5G65980 182 / 8e-53 Auxin efflux carrier family protein (.1) AT1G76530 161 / 8e-45 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093200 [exp] 742 / 0 AT1G71090 513 / 1e-180 Auxin efflux carrier family protein (.1) Potri.008G127700 [exp] 627 / 0 AT1G71090 660 / 0.0 Auxin efflux carrier family protein (.1) Potri.010G115200 [exp] 610 / 0 AT1G71090 607 / 0.0 Auxin efflux carrier family protein (.1) Potri.016G141700 [exp] 293 / 2e-95 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 288 / 1e-93 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1) Potri.005G099300 [exp] 202 / 2e-60 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.001G456400 [exp] 200 / 2e-59 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.001G456300 [exp] 191 / 9e-56 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.002G003500 [exp] 189 / 2e-55 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036000 [exp] 433 / 3e-151 AT1G71090 486 / 3e-172 Auxin efflux carrier family protein (.1) Lus10016704 [exp] 428 / 2e-149 AT1G71090 481 / 2e-170 Auxin efflux carrier family protein (.1) Lus10004059 [exp] 285 / 1e-91 AT1G71090 234 / 3e-72 Auxin efflux carrier family protein (.1) Lus10035610 [exp] 276 / 9e-89 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10003240 [exp] 278 / 2e-86 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 197 / 2e-58 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 196 / 8e-58 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 192 / 1e-56 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10025166 [exp] 181 / 3e-52 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10004287 [exp] 171 / 2e-48 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF03547 [poplar] [flax] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Potri.017G122400.2 pacid=42813741 polypeptide=Potri.017G122400.2.p locus=Potri.017G122400 ID=Potri.017G122400.2.v4.1 annot-version=v4.1 ATGGAAGTTTATCTTGCTTCGGTTCAGAAAAATATGAAATCTGAAGGAGAGATTGTGGAAGCTGCAATTGTACCTCTGTTGAAACTTATAGCCCTTACTC TCTTTGGTTTAATCCTTGCTCACCCAAAAATTCAACTTGTCCCTAAAGCTACTTTCAAGCTCCTTAGCAAGCTTGTTTTTGCTTTGTTCTTGCCTTGCTT AATATTCACCCAGCTTGGTCCATCCATTACTCTCAAGAACATTGTTCAGTGGTGGTTCATTCCTGTAAATGTGATCATTAGCACTGCCATTGGTTGCATA TTGGGATGCTTGGTGGCGATTATATGCCGGCCACCAAGGGAGTTTGTTCGGTTCACAATCATCATGACTGCATTTGGCAACACTGGCAATATTCCACTTG CAATAGTTTCATCGGTGTGTCACAGTTCTGATGCTCCTTTTGGTCCCGATTGTTACGGAAATGGTATTGCTTATGTATCTTTTTCTCAATGGGTTTCTGT TATTCTTGTTTACACTCTTGTTTACCACATGATGGAGCCCCCATTGGAGCAGCATGAGATTGTTGATGAAGAGATTCAGGAAATGCCTGTTGATCTCAGC AATCCACTCCTTGTAGAAGCTGAGTGGCCAGGAATAGAAGAAAAGGAAACAGAAAATAGCAAGACACCTTTCATTGCTAGGCTCTTCAACAGCATCTCTA ACATTTCACGAACAAATATTCCAGATATTGAAACAATAGAAGAGGGAGGAAAGGAGGGAGGTGAACGTAATCCCGAGTCCATTAGGTGCTTGGCAGAGCC TAGGGTGGTTAGAAAGATTAGAGTTGTTGCTGAACAAACACCAATTCATCAAATTCTCCAGCCTCCAACCATTGCTTCTTTCTTAGCTATTGTCATTGGT GTGATTCCTGCTCTCAAACATATTGTTTACGGTGCTGATGCTCCTCTTCAGGTTATCACAGACAGTTTAGATATGATGGCTCAGGCCGCAGTCCCCTCAG TCATGCTTGTTCTTGGGGGAATGATTGGTGAGGGTCCAAATGAATCGAAACTTGGGATTCGGACCACGATTGGCATTATTGTTGCAAGGCTTTTGGTGCT TCCATTTATTGGAATTGGGGTCATCTATTTGGCTGGTAAATGGAATCTTTTAATCCCCGGGAACCATTTGTACCAGTTTGTTCTTTTGCTGCAATACACA ACACCTAGTGCCATTTTGTTGGGAGCTATTGCAAGCTTGAGAGGTTATGCAGTCAAAGAGGCTTCAGCACTTATCTTCTGGCAGCATGTGTGCGCCGTCG TCTCTCTTTCAATATATATGATTGTCTACTTCAAGCTGCTGCTTTCATATATCTAA
AA sequence Show only first row Show all	>Potri.017G122400.2 pacid=42813741 polypeptide=Potri.017G122400.2.p locus=Potri.017G122400 ID=Potri.017G122400.2.v4.1 annot-version=v4.1 MEVYLASVQKNMKSEGEIVEAAIVPLLKLIALTLFGLILAHPKIQLVPKATFKLLSKLVFALFLPCLIFTQLGPSITLKNIVQWWFIPVNVIISTAIGCI LGCLVAIICRPPREFVRFTIIMTAFGNTGNIPLAIVSSVCHSSDAPFGPDCYGNGIAYVSFSQWVSVILVYTLVYHMMEPPLEQHEIVDEEIQEMPVDLS NPLLVEAEWPGIEEKETENSKTPFIARLFNSISNISRTNIPDIETIEEGGKEGGERNPESIRCLAEPRVVRKIRVVAEQTPIHQILQPPTIASFLAIVIG VIPALKHIVYGADAPLQVITDSLDMMAQAAVPSVMLVLGGMIGEGPNESKLGIRTTIGIIVARLLVLPFIGIGVIYLAGKWNLLIPGNHLYQFVLLLQYT TPSAILLGAIASLRGYAVKEASALIFWQHVCAVVSLSIYMIVYFKLLLSYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71090			Auxin efflux carrier family pr...		Potri.017G122400 [exp]	0	1
AT1G02816			Protein of unknown function, D...		Potri.002G203400 [exp]	13.26	0.6843
AT3G26890			unknown protein		Potri.015G103500 [exp]	25.69	0.6679
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.012G024600 [exp]	39.03	0.6811
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Potri.001G222500 [exp]	44.49	0.6831
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.018G092100 [exp]	47.69	0.6777	PSC450.1
AT3G51520			diacylglycerol acyltransferase...		Potri.011G145900 [exp]	52.64	0.6407
AT4G09830			Uncharacterised conserved prot...		Potri.002G064800 [exp]	55.27	0.6290
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.015G031800 [exp]	72.82	0.6096	Pt-NANN.2
AT5G42570			B-cell receptor-associated 31-...		Potri.014G154800 [exp]	77.94	0.6384
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.008G161100 [exp]	98.98	0.5810

Compare expression of checked genes

Potri.017G122400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.