Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37930 179 / 8e-53 Protein with RING/U-box and TRAF-like domains (.1) AT5G37870 164 / 9e-48 Protein with RING/U-box and TRAF-like domains (.1) AT5G37890 163 / 2e-47 Protein with RING/U-box and TRAF-like domains (.1) AT5G37910 161 / 1e-46 Protein with RING/U-box and TRAF-like domains (.1) AT1G66620 151 / 2e-42 Protein with RING/U-box and TRAF-like domains (.1) AT5G62800 147 / 1e-40 Protein with RING/U-box and TRAF-like domains (.1) AT1G66650 136 / 1e-36 Protein with RING/U-box and TRAF-like domains (.1) AT1G66630 129 / 2e-34 Protein with RING/U-box and TRAF-like domains (.1) AT1G66660 129 / 1e-33 Protein with RING/U-box and TRAF-like domains (.1.2) AT4G27880 99 / 7e-23 Protein with RING/U-box and TRAF-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G148100 [exp] 261 / 9e-84 AT5G37930 206 / 4e-63 Protein with RING/U-box and TRAF-like domains (.1) Potri.004G072800 [exp] 247 / 1e-78 AT5G37930 173 / 9e-51 Protein with RING/U-box and TRAF-like domains (.1) Potri.004G091900 [exp] 223 / 2e-71 AT5G37930 143 / 3e-41 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G215400 [exp] 103 / 9e-25 AT3G58040 471 / 4e-169 seven in absentia of Arabidopsis 2 (.1) Potri.001G010500 [exp] 102 / 1e-24 AT3G58040 455 / 3e-163 seven in absentia of Arabidopsis 2 (.1) Potri.003G198600 [exp] 100 / 7e-24 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.T126006 [exp] 100 / 7e-24 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.001G026200 [exp] 98 / 6e-23 AT3G61790 450 / 2e-160 Protein with RING/U-box and TRAF-like domains (.1) Potri.002G171500 [exp] 97 / 3e-22 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009111 [exp] 168 / 7e-50 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10028535 [exp] 167 / 1e-49 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10013739 [exp] 109 / 6e-27 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10039202 [exp] 109 / 9e-27 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10002761 [exp] 100 / 3e-23 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 100 / 4e-23 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10030248 [exp] 96 / 5e-22 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10004001 [exp] 96 / 6e-22 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10022405 [exp] 94 / 3e-21 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10018110 [exp] 94 / 3e-21 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [poplar] [flax] TRAF PF03145 [poplar] [flax] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Potri.017G122800.2 pacid=42813733 polypeptide=Potri.017G122800.2.p locus=Potri.017G122800 ID=Potri.017G122800.2.v4.1 annot-version=v4.1 ATGGTTAAGTTCCCTGAAGAAAATGAAGATGGACCCAGCAATCCATCTCGCAAGAGACAAAGGGTTTCTTCAACTTCCGGTGGTTTTTCTGCTGCTACTC CAAACCAAGAGACCCAACAGCATCTAGAGAATGAAAATCAAGAAGCAACCCAACAGCACCAAGAGAATGAAAATCGAGAGACAACCCATCAGCATCAATC AAATGAAAATGAAGAGACCCAACAGCATGAATCAAATGAAGAAAATGAAGGGACCCATCAGCATCAAGCAAATGAAAATGAAGAAACCCAACAGCATCAA GAAAATGAAAATCAAGAATCTTCTGAAGAAGAGGACGAGTATCTTAGTGATGGTGGGGCGGAAGCTGAACAAGAGGATGACGTACTCGATAAATTAAGCA GTTTTCTTGGCGATGGTGCCATGTCAATGACCCTCATGGACCTAGATATTCTTGATTGCGCAATCTGCTTATATCCCTTGACTATCCCTGTCTTTCAGTG TGAGAATGGGCACACAGCTTGCTCTTCCTGCTGCAGTAAACTTGCACATAAATGTCCTGCCTGCTCGTTTCCTATCGGCAATAATCGCTGTCGGGCTATC GAGAAGGTTCTTGAATCAGTAAGGATACCATGCGAAAATATGCGGTATGGGTGTGGAGGGACATTTATTTACAGCGAGAAGTACAATCATGATAAGAGTT GCATCTATGCACCATGCTCCTGCCCAATACAAGGTTGCAACTTCATCAGCTCTTCTAAGAAGTTAGACCCGCATTTGCGTTGCAGGCATGTAGGTGATGT GATACGCTTTTACTATGGTGGGGCATTCCCTCTTCCCTTAACTGTTGGTCAAAATTCTGTGGTTCTCCAAGAAACTGACGATGGTGCTATATTTATTCTT CATCATCATGAAGAAACCTTTGGGAATATTGTCACAATTAGTTGCTTAGGGCCGCCCACATCTGCAGGAGAACACTTCTACGAACTTTCAACAAATGAAT ACTTCTATGATCTTTCAAAAAAATCTCAGGGAAAGAGTTTCAAATTTCAGTCTTATATGCAGAGTATTCAGAGCAGGGTTGATCACCCTCTCTCGGCGGG GCTCGTTCTACCTCCAGGTCAGTTTTTTGGTACATCTAAGATGATATACCTTGATCTCATCATATGGCGTAAGGGTGACTGCCCTTTAAACATCCAAAGC AGTACAAATGCCAATTAA
AA sequence Show only first row Show all	>Potri.017G122800.2 pacid=42813733 polypeptide=Potri.017G122800.2.p locus=Potri.017G122800 ID=Potri.017G122800.2.v4.1 annot-version=v4.1 MVKFPEENEDGPSNPSRKRQRVSSTSGGFSAATPNQETQQHLENENQEATQQHQENENRETTHQHQSNENEETQQHESNEENEGTHQHQANENEETQQHQ ENENQESSEEEDEYLSDGGAEAEQEDDVLDKLSSFLGDGAMSMTLMDLDILDCAICLYPLTIPVFQCENGHTACSSCCSKLAHKCPACSFPIGNNRCRAI EKVLESVRIPCENMRYGCGGTFIYSEKYNHDKSCIYAPCSCPIQGCNFISSSKKLDPHLRCRHVGDVIRFYYGGAFPLPLTVGQNSVVLQETDDGAIFIL HHHEETFGNIVTISCLGPPTSAGEHFYELSTNEYFYDLSKKSQGKSFKFQSYMQSIQSRVDHPLSAGLVLPPGQFFGTSKMIYLDLIIWRKGDCPLNIQS STNAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37930			Protein with RING/U-box and TR...		Potri.017G122800 [exp]	0	1
AT3G42660			transducin family protein / WD...		Potri.012G065200 [exp]	4.47	0.9062
AT1G48580			unknown protein		Potri.012G047000 [exp]	5.29	0.8643
AT3G52630			Nucleic acid-binding, OB-fold-...		Potri.006G212100 [exp]	6.55	0.8484
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	7.61	0.8992
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Potri.005G165400 [exp]	8.83	0.8654
AT5G46740		UBP21	ubiquitin-specific protease 21...		Potri.001G142000 [exp]	11.83	0.8974	Pt-UBP21.2
AT4G14970			unknown protein		Potri.006G023500 [exp]	12.12	0.8949
AT2G37960			unknown protein		Potri.006G094600 [exp]	12.44	0.8970
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Potri.008G203900 [exp]	12.64	0.8824
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Potri.004G131600 [exp]	13.74	0.8978

Compare expression of checked genes

Potri.017G122800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.