Plant FIBer expression Database

Potri.017G123300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G66520 516 / 0 PDE194 pigment defective 194, formyltransferase, putative (.1)
AT5G47435 55 / 3e-08 formyltetrahydrofolate deformylase, putative (.1.2)
AT4G17360 52 / 4e-07 Formyl transferase (.1)
AT1G31220 48 / 5e-06 Formyl transferase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G078000
[exp]
58 / 3e-09 AT5G47435 484 / 7e-174 formyltetrahydrofolate deformylase, putative (.1.2)
Potri.001G156600
[exp]
54 / 5e-08 AT5G47435 476 / 2e-170 formyltetrahydrofolate deformylase, putative (.1.2)
Potri.012G107500
[exp]
50 / 8e-07 AT1G31220 337 / 1e-116 Formyl transferase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000450
[exp]
527 / 0 AT1G66520 510 / 0.0 pigment defective 194, formyltransferase, putative (.1)
Lus10010978
[exp]
505 / 1e-180 AT1G66520 496 / 2e-177 pigment defective 194, formyltransferase, putative (.1)
Lus10028958
[exp]
51 / 6e-07 AT5G47435 498 / 3e-179 formyltetrahydrofolate deformylase, putative (.1.2)
Lus10040974
[exp]
49 / 2e-06 AT1G31220 327 / 3e-112 Formyl transferase (.1)
Lus10013428
[exp]
49 / 4e-06 AT1G31220 326 / 4e-112 Formyl transferase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00551 Formyl_trans_N Formyl transferase
Representative CDS sequence
>Potri.017G123300.5 pacid=42813712 polypeptide=Potri.017G123300.5.p locus=Potri.017G123300 ID=Potri.017G123300.5.v4.1 annot-version=v4.1
ATGAATTCTTCATTAATGCTACGCCGTTTCTTCTGTTTCAACTCAACAAGAACTGCAGTAACAGCAGCATCTTCTACTTCTTCAAAGAAGAAACCCCTTG
TCTTCTTGGGTTCTCCTCAGGTGGCTGCTACTGTTCTTGATGCTCTTTTCAATGCATCTAAAGCACCCAATTCTCTCTTTGAGGTGGCAGCTATTGTTAC
ACAGCCACCTGCAAGAAGAGACAGGGGTAAAAAGTTAATGCCTTCACCAGTTGCTGAGTTTGCTCTTGATACAGGCTTCCCTTCTGATCTTATTTTCACA
CCTGAAAGAGCTGGAGAGGATACATTTTTGTCCACTCTAAGAGCATTGCAGCCTGAACTTTGCATTACAGCAGCATATGGGAATATCTTACCAACCAAGT
TTCTCAATATTCCACCAATGGGGACGGTCAATATACACCCAAGTCTTCTGCCACTTTACCGTGGTGCTGCTCCTGTTCAAAGAGCATTGCAGGATGGTGC
TAAGGAAACTGGGGTATCATTAGCTTTCACTGTTCGTGCTCTCGATGCTGGACCTGTAATTGCCTATGAAACTCTGGAAGTTGATGATCAAATTAAGGCT
CCAGATTTACTTGCATTGCTATTTTTGGAAGGATCTAAACTTTTGATTCATGAGCTCCCTTCTATACTTCACGGATCAGCCAGGTTAAAAGCTCAACCCC
AAGATGATTCCAAAGCTACCTTGGCTCCAAAGATATCTGTTGAGGAGTCATGGTTATCCTTTGATCAAGAAGCTTCAGTCCTCCATAATAAGGTTCGTGC
ATTTGCAGGGTGGCCAGGGACACGGGCTAAAGTAGCAATTGTTGATGATGAAAATGATCGCCGCAATATTGTAGAACTTAAGATTATTACTACAAGAGTT
TGCGACCGTAGCATTGTTCAGGGTGATGAAGCGGATGACATCACTTATGTGAAGGATTCGTTGGTGTTTCCATGTGGAAGGTCTACAGCGCTTGAGGTAT
TGGAACTCCAGCTTCCTGGGAAAAAGGTTTTTCGTGCAGCTGCCTTTTGGAATGGTTTGCGTGGTCAAAAGCTGAAGAAACTGTAG
AA sequence
>Potri.017G123300.5 pacid=42813712 polypeptide=Potri.017G123300.5.p locus=Potri.017G123300 ID=Potri.017G123300.5.v4.1 annot-version=v4.1
MNSSLMLRRFFCFNSTRTAVTAASSTSSKKKPLVFLGSPQVAATVLDALFNASKAPNSLFEVAAIVTQPPARRDRGKKLMPSPVAEFALDTGFPSDLIFT
PERAGEDTFLSTLRALQPELCITAAYGNILPTKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQDGAKETGVSLAFTVRALDAGPVIAYETLEVDDQIKA
PDLLALLFLEGSKLLIHELPSILHGSARLKAQPQDDSKATLAPKISVEESWLSFDQEASVLHNKVRAFAGWPGTRAKVAIVDDENDRRNIVELKIITTRV
CDRSIVQGDEADDITYVKDSLVFPCGRSTALEVLELQLPGKKVFRAAAFWNGLRGQKLKKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G66520 PDE194 pigment defective 194, formylt... Potri.017G123300
[exp]
0 1
AT3G19720 DRP5B, ARC5 Dynamin related protein 5B, AC... Potri.006G254900
[exp]
2.82 0.7610
AT5G63060 Sec14p-like phosphatidylinosit... Potri.015G080100
[exp]
8.48 0.7392
AT2G25840 OVA4 ovule abortion 4, Nucleotidyly... Potri.003G158000
[exp]
8.66 0.7738
AT4G31780 UGT81A1, EMB279... UDP-glycosyl transferase 81A1,... Potri.018G016600
[exp]
9.27 0.7728
AT2G25570 binding (.1.2.3) Potri.001G219400
[exp]
9.38 0.6654
AT5G48385 FRIGIDA-like protein (.1) Potri.007G050800
[exp]
10.95 0.7098
AT2G25100 Polynucleotidyl transferase, r... Potri.008G019800
[exp]
15.19 0.7426
AT4G22910 CCS52A1, FZR2 cell cycle switch protein 52 ... Potri.003G119500
[exp]
15.65 0.6871 Pt-CCS52.1
AT5G01650 Tautomerase/MIF superfamily pr... Potri.016G126500
[exp]
17.74 0.6534
AT3G52640 Zn-dependent exopeptidases sup... Potri.004G082900
[exp]
18.33 0.6668

Potri.017G123300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.