Plant FIBer expression Database

Potri.017G123900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G66510 576 / 0 AAR2 protein family (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009118
[exp]
565 / 0 AT1G66510 505 / 7e-180 AAR2 protein family (.1.2.3)
Lus10028528
[exp]
528 / 0 AT1G66510 473 / 5e-166 AAR2 protein family (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05282 AAR2 AAR2 protein
Representative CDS sequence
>Potri.017G123900.1 pacid=42813922 polypeptide=Potri.017G123900.1.p locus=Potri.017G123900 ID=Potri.017G123900.1.v4.1 annot-version=v4.1
ATGGATCCAGAGACGGCGTTAGAGCTGGTAAAGCAAGGAGCCACACTCCTCCTCCTCGATGTCCCTCAGTACACTCTTGTCGGCATTGACACTCAGATGT
TTACAGTGGGACCAGCATTTAAAGGCATCAAAATGATACCTCCTGGTCCTCATTTTGTTTACTACAGTTCTTCTAGTAAAGACGGCAAGCAATTCTCCCC
TATCGTTGGCTTCTTCGTTGATGCGGATCCGTCTGAGGTTATTGTTCGTAAATGGAATCAACAAGAGGAAAGGCTGGTGAAGGTTCCAGAAGACGAGGAA
GAAAGATTTTGCCAAGCAGTTAAAAGTTTAGAGTTTGACAGATATCTTGGTCCTTATAACCTAAGCCAGTATGGAGAATGGAAGCGATTGTCTAGTTACC
TCACAAAGACCATCATCAAACGAATTGAACCCATTGGGGGAGAAATTACAGTTGCATGTGAATCTGAAATGGATAAAAACAGTCCTAAAACATCAATCGA
GAGAGCTCTACATGCACAATTGGGGACTGGTAAGTTCTCAGCATCTACATCAGTTGATCGGTCCAAGAAGAGAGGATGTTATTACACTACAATCCCACGT
GTTATTAAACGCAGAGGAATGGAGGGGAAAGAACTTACTTCTTTGAATCTTGACAAGACTGAATTACTAGAAAGTGTTTTGATTAAAGACTACGGAGGTT
CCGAAGACTTACTTCTAGGGGAGCTGCAATTTGCTTATATTGCATTTTTGATGGGGCAATCACTTGAAGCATTTTTTCAGTGGAAATCTTTAGTTAGCCT
TCTACTGAGTTGCATTGAAGCTCCTTTTCGTACAAGGAGTCATCTTTTTACTAAGTTCATCAAGGTCATCTTCTATCAACTGAAATATGGACTTCAGAAA
GATAGGAAAGAAAGTAATGGTGCAGGAATAGCAGTATCATCATTGCTGGACGAGTCATGGTTTTCTGCTGATAGCTTTTTGCACCGACTTTGCAAGGATT
TCTTTTTGTTGGTGCAAGATGCCACTGTGGTGGATGGAGATCTTTTGACATGGACTAGGAAACTGAAAGAACTACTTGAGAATATTCTGGGATGGGAGTT
CCAGCAGAATAGCGCAGTTGATGGCATATACTTCGAAGAGGATGATGAGTTTGCTCCTGTAGTTGAGATGTTGGATGAGTCGAGCTTCAATGGAGTTCCA
GCTGCTTAG
AA sequence
>Potri.017G123900.1 pacid=42813922 polypeptide=Potri.017G123900.1.p locus=Potri.017G123900 ID=Potri.017G123900.1.v4.1 annot-version=v4.1
MDPETALELVKQGATLLLLDVPQYTLVGIDTQMFTVGPAFKGIKMIPPGPHFVYYSSSSKDGKQFSPIVGFFVDADPSEVIVRKWNQQEERLVKVPEDEE
ERFCQAVKSLEFDRYLGPYNLSQYGEWKRLSSYLTKTIIKRIEPIGGEITVACESEMDKNSPKTSIERALHAQLGTGKFSASTSVDRSKKRGCYYTTIPR
VIKRRGMEGKELTSLNLDKTELLESVLIKDYGGSEDLLLGELQFAYIAFLMGQSLEAFFQWKSLVSLLLSCIEAPFRTRSHLFTKFIKVIFYQLKYGLQK
DRKESNGAGIAVSSLLDESWFSADSFLHRLCKDFFLLVQDATVVDGDLLTWTRKLKELLENILGWEFQQNSAVDGIYFEEDDEFAPVVEMLDESSFNGVP
AA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G66510 AAR2 protein family (.1.2.3) Potri.017G123900
[exp]
0 1
AT3G44110 ATJ3 DNAJ homologue 3 (.1.2) Potri.009G015700
[exp]
2.64 0.9492 Pt-PM37.1
AT5G07330 unknown protein Potri.012G111000
[exp]
3.00 0.9316
Potri.002G154150
[exp]
3.87 0.9295
AT3G07150 unknown protein Potri.002G244400
[exp]
4.24 0.9274
AT2G31870 PARG1, TEJ Sanskrit for 'bright', poly\(A... Potri.017G002000
[exp]
5.29 0.8877 Pt-TEJ.2
AT5G01110 Tetratricopeptide repeat (TPR)... Potri.001G139300
[exp]
7.61 0.8872
AT5G52640 AtHsp90-1, ATHS... HEAT SHOCK PROTEIN 83, HEAT SH... Potri.017G146600
[exp]
7.74 0.9377
AT1G35660 unknown protein Potri.019G083100
[exp]
8.06 0.9081
AT5G56290 EMB2790, PEX5, ... EMBRYO DEFECTIVE 2790, ARABIDO... Potri.001G473100
[exp]
10.09 0.8848 PEX5.2
AT2G25140 HSP98.7, CLPB-M... HEAT SHOCK PROTEIN 98.7, CASEI... Potri.006G262700
[exp]
11.48 0.9089

Potri.017G123900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.