Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 83 / 4e-18 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 77 / 2e-16 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT5G49490 78 / 3e-16 MADS AGL83 AGAMOUS-like 83 (.1) AT5G04640 76 / 2e-15 MADS AGL99 AGAMOUS-like 99 (.1) AT1G46408 73 / 7e-15 MADS AGL97 AGAMOUS-like 97 (.1) AT5G27130 74 / 1e-14 MADS AGL39 AGAMOUS-like 39 (.1) AT5G49420 72 / 4e-14 MADS MADS-box transcription factor family protein (.1) AT1G65360 69 / 2e-13 MADS AGL23 AGAMOUS-like 23 (.1) AT5G38620 69 / 4e-13 MADS MADS-box transcription factor family protein (.1) AT1G01530 68 / 4e-13 MADS AGL28 AGAMOUS-like 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G258550 [exp] 511 / 0 AT5G60440 82 / 1e-17 AGAMOUS-like 62 (.1) Potri.012G110100 [exp] 508 / 0 AT5G60440 81 / 5e-17 AGAMOUS-like 62 (.1) Potri.006G258500 [exp] 508 / 0 AT5G60440 84 / 6e-18 AGAMOUS-like 62 (.1) Potri.009G084100 [exp] 78 / 6e-17 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.002G062000 [exp] 71 / 7e-15 AT2G24840 87 / 3e-21 DIANA, AGAMOUS-like 61 (.1) Potri.017G047300 [exp] 71 / 5e-14 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.014G074100 [exp] 71 / 6e-14 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.009G084200 [exp] 67 / 5e-13 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.004G131100 [exp] 66 / 9e-13 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012449 [exp] 77 / 3e-16 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10020511 [exp] 77 / 3e-16 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10030663 [exp] 72 / 7e-15 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10030824 [exp] 69 / 1e-13 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10015271 [exp] 65 / 4e-12 AT2G24840 114 / 6e-31 DIANA, AGAMOUS-like 61 (.1) Lus10005081 [exp] 65 / 1e-11 AT1G69120 223 / 1e-72 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10011456 [exp] 63 / 3e-11 AT5G49420 74 / 2e-15 MADS-box transcription factor family protein (.1) Lus10034370 [exp] 62 / 3e-11 AT1G69120 224 / 1e-73 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10004637 [exp] 62 / 4e-11 AT1G69120 318 / 2e-111 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10040832 [exp] 61 / 4e-11 AT2G34440 135 / 1e-40 AGAMOUS-like 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.017G124000.1 pacid=42813465 polypeptide=Potri.017G124000.1.p locus=Potri.017G124000 ID=Potri.017G124000.1.v4.1 annot-version=v4.1 ATGGGGAGAACAAGAAAAATTCCAATGGCAAAGCGAGAAACAGCAGAGCAAAGGTCTGTTACTTTTACTAAAAGACGTCAAGGTCTTTTCAACAAAGCAG CAGATTTGTGCAGGATTTGTGATGCTCAAATTGCCATTATGGTCTCCTCAACTGGGTCCAAAGAAAAAGTTTATACCTTTGGCCACTCTTCCATTGATGC TGTCTTCGACAGGTTCCTCGACAATTTTACAGCAGCCCCGGAAGCGGTAGCATACGAAGCAGGAATCAAGTCAGCCAGTAATTCCCTCTATGAAGAAATC AAGGCATTGGAGGGTGATGTTAATACTCTAATGCAAAACAAGAAGAGAAACGTTGGAGGGGTTTTATGGGATTCTTTAGAGGAGATTGAGCAGTCTAGTA CTTCAGTTGAAGAGTTACAGGATGTTGTAGATACCCTGGAAAGTTTGTTGGGTCAGGCCAAGAATAAGCTGATGAATAACGCAACCGAGAATCTTGGTAT AAGCATAGCTGTTGAGCCAAAGTCTGATGATTTTTTGGCTTTAGAGCCTAAACCCCGAGATGATTCTTCATCTAGCTTGGGTGGTGATCAAATCGGTCAG AATTCTGCCATTATAGGAGATAATGGTGCTAATTATTCTGATTCATATTGGAATGCTGATGGTTCAACTACTGATAGTGGTATGGAATTTCCAGTCGAAG TCGATTTGGATCTTATATGGAATCTCCTTGAGTCTTCTGATTTCAGCTCGTGTTCTGACAAAGTTATTTCCATTAACAACAGTAGTGACTGCACTACTTC AGGGACTGCTTCTGAATCAGCTTCAGGCTATTGCTTGACTGATCAGCTGGGACTTCCATTGCTCACTGCAGGTGCGAATCAGTTTGAAGATTGGACAAAC TATTATCAATGTTGA
AA sequence Show only first row Show all	>Potri.017G124000.1 pacid=42813465 polypeptide=Potri.017G124000.1.p locus=Potri.017G124000 ID=Potri.017G124000.1.v4.1 annot-version=v4.1 MGRTRKIPMAKRETAEQRSVTFTKRRQGLFNKAADLCRICDAQIAIMVSSTGSKEKVYTFGHSSIDAVFDRFLDNFTAAPEAVAYEAGIKSASNSLYEEI KALEGDVNTLMQNKKRNVGGVLWDSLEEIEQSSTSVEELQDVVDTLESLLGQAKNKLMNNATENLGISIAVEPKSDDFLALEPKPRDDSSSSLGGDQIGQ NSAIIGDNGANYSDSYWNADGSTTDSGMEFPVEVDLDLIWNLLESSDFSSCSDKVISINNSSDCTTSGTASESASGYCLTDQLGLPLLTAGANQFEDWTN YYQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.017G124000 [exp]	0	1
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G177900 [exp]	5.29	0.8753
AT3G25920		RPL15	ribosomal protein L15 (.1)		Potri.010G124301 [exp]	9.53	0.8135
AT5G44680			DNA glycosylase superfamily pr...		Potri.003G156500 [exp]	21.77	0.8431
AT5G14410			unknown protein		Potri.001G342100 [exp]	22.18	0.8526
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Potri.004G020400 [exp]	29.52	0.8462	ATML1.2
AT3G60120		BGLU27	beta glucosidase 27 (.1)		Potri.005G059500 [exp]	30.51	0.8322
AT1G78560			Sodium Bile acid symporter fam...		Potri.003G008700 [exp]	32.03	0.7904
AT1G51405			myosin-related (.1)		Potri.009G052400 [exp]	33.40	0.8053
AT5G42110			unknown protein		Potri.011G151900 [exp]	34.95	0.7842
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Potri.001G342000 [exp]	37.78	0.8068	Pt-PHOT1.1

Compare expression of checked genes

Potri.017G124000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.