Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02645 473 / 1e-162 Plant protein of unknown function (DUF247) (.1) AT3G50170 122 / 2e-29 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50130 91 / 4e-19 Plant protein of unknown function (DUF247) (.1) AT3G50180 89 / 1e-18 Plant protein of unknown function (DUF247) (.1) AT3G50120 87 / 6e-18 Plant protein of unknown function (DUF247) (.1) AT3G50140 83 / 1e-16 Plant protein of unknown function (DUF247) (.1) AT3G50150 79 / 2e-15 Plant protein of unknown function (DUF247) (.1) AT3G44710 77 / 9e-15 Plant protein of unknown function (DUF247) (.1) AT3G50160 74 / 6e-14 Plant protein of unknown function (DUF247) (.1) AT2G36430 71 / 6e-13 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085300 [exp] 784 / 0 AT3G02645 519 / 2e-180 Plant protein of unknown function (DUF247) (.1) Potri.001G337900 [exp] 562 / 0 AT3G02645 465 / 2e-159 Plant protein of unknown function (DUF247) (.1) Potri.001G205100 [exp] 546 / 0 AT3G02645 458 / 7e-157 Plant protein of unknown function (DUF247) (.1) Potri.003G024100 [exp] 537 / 0 AT3G02645 441 / 8e-150 Plant protein of unknown function (DUF247) (.1) Potri.001G337800 [exp] 523 / 0 AT3G02645 449 / 4e-153 Plant protein of unknown function (DUF247) (.1) Potri.017G062900 [exp] 523 / 0 AT3G02645 427 / 8e-145 Plant protein of unknown function (DUF247) (.1) Potri.003G205900 [exp] 361 / 9e-119 AT3G02645 332 / 2e-107 Plant protein of unknown function (DUF247) (.1) Potri.016G039866 [exp] 87 / 6e-18 AT3G50180 164 / 2e-44 Plant protein of unknown function (DUF247) (.1) Potri.014G053700 [exp] 87 / 8e-18 AT3G60470 164 / 1e-44 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015084 [exp] 437 / 3e-148 AT3G02645 382 / 4e-127 Plant protein of unknown function (DUF247) (.1) Lus10023185 [exp] 433 / 2e-146 AT3G02645 378 / 1e-125 Plant protein of unknown function (DUF247) (.1) Lus10031159 [exp] 178 / 3e-49 AT3G02645 175 / 2e-48 Plant protein of unknown function (DUF247) (.1) Lus10033668 [exp] 129 / 6e-32 AT3G02645 165 / 8e-45 Plant protein of unknown function (DUF247) (.1) Lus10019721 [exp] 118 / 6e-28 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10016396 [exp] 118 / 7e-28 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10026964 [exp] 100 / 5e-22 AT3G02645 118 / 3e-28 Plant protein of unknown function (DUF247) (.1) Lus10009504 [exp] 96 / 6e-21 AT3G02645 196 / 3e-56 Plant protein of unknown function (DUF247) (.1) Lus10006802 [exp] 87 / 7e-18 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 83 / 1e-16 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.017G124100.1 pacid=42813761 polypeptide=Potri.017G124100.1.p locus=Potri.017G124100 ID=Potri.017G124100.1.v4.1 annot-version=v4.1 ATGTCTTCTTGCCAATCCACCATGCCCTCCAATGCAAATCCAAACTTTGATGAACATCGATGGATGATTAACATTCGTCGAACACTCGACGAGGAGCTTG AAGATGACACTGAAATTCCTGTCTGTATTTTCAATGTCCTTAAAATTCTAATGACAAGTTGCCCAGATTGCTATGTTCCACAGCAAGTTGCAATAGGTCC ATACCATTACTGGCGTCCGGAGCTCTATGAGATGGAGAGGTACAAGCTCGCCGCGGCAAAACGAGCTCAGAAACGCCTCGAAAGCCTCAAGTTTTCACAC ATTGTTGATAACTTGATCAACCTTGAGTTGAAGATCCGAGCTTGTTATCATAAGTTCTTAGATTTTAGTAATGAGACTTTAGCCTGGATGATGGCCATTG ATGCGTCATTCTTGCTTGAATTCCTACAAATTTATGCCATCAAAGAAGGGATCGCTTTCACTAGAGTCTCCTCAAGAATGTCACATTTGGTTGATTATGC AGGGAGAAAATCAGGCCACAACGCAATTCTCAGAGATATGGTAATGCTTGAGAACCAAATCCCATTATTTGTGTTGAGAAAAATTCTTGAAGTTCAATTG TCATCGTTAGAGATGGCTGATGATACGCTACTCTCAATGCTGGTTGGATTTTATAAGGAGATTTCCCCATTTAAGACGTTGGAGGACATTCCCAAGATCA ATATTTCTCAATGTGCCCACTTGCTAGACTATTTGTATGACATTATTGTGCCCAATATTGAAGCACCAGAAGAGATAAATGAGGCTGACGATCAGCTTGA TGCAATGCAAGGCAAATGTCTGTCATCCGAGAATTCAAACCTAATCTCAAGGCTAAGCGAAGGTCTGGTGCGTCTTCTCAAAATATTGCTATTTTCTAGA CATGTTAAGGCCATGCTTAAATTGCCTTGGACAATCGTCTCTAACCTTCCTGGATGTTCAATCTTGAAACAACCTGTTGAATACCTTTTCTTCTCACAAG ACAGAGAAGTCAAACCAGAGAATGAGAACCTGAACAATGAACATAACAAGCCTCCATTGGCAGAGGAGATTGCAATTCCTTGTGTCGCCGAACTGTTCAG ATCCGGAATCCGTTTTGCACCGACAACAGGTAACATCCTAAGCATTAGTTTTGATGCCAAGACCGATACATTTTACCTTCCGATTATCAGTTTAGAAGTG AACACAGAGGTGGTCCTAAGAAACTTAGTAGCATATGAGGCTTCAAACGCGTCAGGACCATTGGTTTTTACGCGTTATACTGAATTAATGAATGGGATAA TTGATACCGAAGAGGATGTGAAGCTGCTTAGAGAAAAAGGCATAATTTTGAACCGGTTAAAGAGTGATGAGGAGGTTGCCAACTTGTGGAATGGGATGAG CAAATCTATTAGACTTACTAAGGTTCCTTTCTTAGACAAAGTGATTGAAGATGTTAACAAGTATTACAATGGACGATGGACAGTAAAAGGTGGTAGATTT ATGAGGCAATATGTGTTTAGTTCTTGGCAGTTTCTTACATTGCTGGCTGCCATTTTTCTTTTGCTCTTGATGACATTGGAAGTCTTTTGCACTGTCTATA GATACACTCGAATACTTCATATGAGACCACCTAGAAACTAG
AA sequence Show only first row Show all	>Potri.017G124100.1 pacid=42813761 polypeptide=Potri.017G124100.1.p locus=Potri.017G124100 ID=Potri.017G124100.1.v4.1 annot-version=v4.1 MSSCQSTMPSNANPNFDEHRWMINIRRTLDEELEDDTEIPVCIFNVLKILMTSCPDCYVPQQVAIGPYHYWRPELYEMERYKLAAAKRAQKRLESLKFSH IVDNLINLELKIRACYHKFLDFSNETLAWMMAIDASFLLEFLQIYAIKEGIAFTRVSSRMSHLVDYAGRKSGHNAILRDMVMLENQIPLFVLRKILEVQL SSLEMADDTLLSMLVGFYKEISPFKTLEDIPKINISQCAHLLDYLYDIIVPNIEAPEEINEADDQLDAMQGKCLSSENSNLISRLSEGLVRLLKILLFSR HVKAMLKLPWTIVSNLPGCSILKQPVEYLFFSQDREVKPENENLNNEHNKPPLAEEIAIPCVAELFRSGIRFAPTTGNILSISFDAKTDTFYLPIISLEV NTEVVLRNLVAYEASNASGPLVFTRYTELMNGIIDTEEDVKLLREKGIILNRLKSDEEVANLWNGMSKSIRLTKVPFLDKVIEDVNKYYNGRWTVKGGRF MRQYVFSSWQFLTLLAAIFLLLLMTLEVFCTVYRYTRILHMRPPRN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02645			Plant protein of unknown funct...		Potri.017G124100 [exp]	0	1
					Potri.004G086050 [exp]	4.69	0.6270
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.012G060700 [exp]	8.00	0.7133
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Potri.006G219700 [exp]	9.48	0.6727
					Potri.009G026850 [exp]	15.09	0.5846
AT5G06990			Protein of unknown function, D...		Potri.003G193700 [exp]	20.00	0.5083
AT2G04025		RGF3	root meristem growth factor 3,...		Potri.008G112400 [exp]	20.71	0.5491
AT5G12180		CPK17	calcium-dependent protein kina...		Potri.001G274700 [exp]	22.49	0.5841
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.009G091950 [exp]	24.67	0.5612
					Potri.005G022400 [exp]	33.04	0.5203
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.009G021400 [exp]	37.14	0.5608

Compare expression of checked genes

Potri.017G124100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.