Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37830 413 / 5e-135 OXP1 oxoprolinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091000 [exp] 472 / 1e-157 AT5G37830 2153 / 0.0 oxoprolinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025331 [exp] 411 / 2e-134 AT5G37830 2219 / 0.0 oxoprolinase 1 (.1) Lus10024411 [exp] 408 / 3e-133 AT5G37830 2214 / 0.0 oxoprolinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02538 [poplar] [flax] Hydantoinase_B Hydantoinase B/oxoprolinase
Representative CDS sequence Show only first row Show all	>Potri.017G124400.2 pacid=42813254 polypeptide=Potri.017G124400.2.p locus=Potri.017G124400 ID=Potri.017G124400.2.v4.1 annot-version=v4.1 ATGACCTATGTGCTGCTCAATGCGGTAGAAGCAGCGAGGCAAATGCTCAAATCAGTTGCTTCTAGAGTTTCATCTCAGTCAGCTAAGTTCGGTGAGAATG ATAATATAGCTATGGAAGAAGAGGATAGCATGGATGATGGCTCTATCACACATCTGAAACTTAATATTCATTCTAATAAAGGCGGGGAAGCATTTTTCGA TTATAGAGGGACCAGCCCTGAGGTGCGTGGAAATTGGAATGCACTAGAAGCAGTAATAGCTGCCGCAGTCATATACTGCCTTCGCTGTTTGGTGGATGTT GATATTCCTCTCAACCAAGGTTGTTTAGCCCCGGTTGGAATCCATGTTCCTAAAGGCTTATTCCTTTCTCCAAGTGACAAGGCTGCATTTGTTGGAGGTA ATGTTCTCACGTCTCATAGTCATAGAGTAACTGATGTTGTACTTACTGCCTTTCAGGCCTGTGCTTGTCCTCAGGGTTGCATGAATAATCTTACTTTTGG GGATTATACTTTCAGCTATTATGAAACAATTGGCGGTGGAAGTGGGGCTGGTCCGCACTGGCATGGGACAAGTGGAGTCCAGTGCCATATGACCAATGCT CGAATGACTGATCCAGAGATTTTTGATCCGAGGAATCCAGTTCTTTTGCACAGGTTTGAACTGAGAGAACAGTGGAGGGTCGATCTGGGCTTCATAAAGG GGGTTATGGCCTTGTACGAGATAGAGTTCAGTCGGCCATTTGTAGTGAGTATCCTTTCAGAAAGGCGTGTGCATGCACCAAGAGGTTTGAAGAGGGGAAA AGACGGGGCTCGTGGAGCCAACCATCTGACTACAAAAGATAAACGAAGAGTTTACCTTGGAGGTAAGAAAACAGTTGAGGTGCAGGCAGGGGAAATTCTT CAGATTTTGACTCCTAGAGACGATGTGTGGGGTTCATGTTGA
AA sequence Show only first row Show all	>Potri.017G124400.2 pacid=42813254 polypeptide=Potri.017G124400.2.p locus=Potri.017G124400 ID=Potri.017G124400.2.v4.1 annot-version=v4.1 MTYVLLNAVEAARQMLKSVASRVSSQSAKFGENDNIAMEEEDSMDDGSITHLKLNIHSNKGGEAFFDYRGTSPEVRGNWNALEAVIAAAVIYCLRCLVDV DIPLNQGCLAPVGIHVPKGLFLSPSDKAAFVGGNVLTSHSHRVTDVVLTAFQACACPQGCMNNLTFGDYTFSYYETIGGGSGAGPHWHGTSGVQCHMTNA RMTDPEIFDPRNPVLLHRFELREQWRVDLGFIKGVMALYEIEFSRPFVVSILSERRVHAPRGLKRGKDGARGANHLTTKDKRRVYLGGKKTVEVQAGEIL QILTPRDDVWGSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37830		OXP1	oxoprolinase 1 (.1)		Potri.017G124400 [exp]	0	1
AT3G42170			BED zinc finger ;hAT family di...		Potri.018G126500 [exp]	4.24	0.8386
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.008G117400 [exp]	4.89	0.8542
AT1G23230			unknown protein		Potri.010G108350 [exp]	5.09	0.8700
AT3G58610			ketol-acid reductoisomerase (....		Potri.014G055100 [exp]	12.32	0.8220
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.001G355900 [exp]	12.64	0.8402
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.008G003502 [exp]	12.80	0.8602
AT5G08530		CI51	51 kDa subunit of complex I (....		Potri.008G177801 [exp]	22.31	0.7353
AT4G17260			Lactate/malate dehydrogenase f...		Potri.003G111201 [exp]	25.25	0.8154
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.004G157900 [exp]	30.00	0.8274
					Potri.014G125800 [exp]	33.86	0.8018

Compare expression of checked genes

Potri.017G124400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.