Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16715 1627 / 0 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT1G14610 659 / 0 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) AT5G49030 184 / 1e-47 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT4G10320 138 / 6e-33 tRNA synthetase class I (I, L, M and V) family protein (.1) AT4G04350 92 / 7e-19 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) AT1G27160 54 / 5e-08 valyl-tRNA synthetase / valine--tRNA ligase-related (.1) AT3G55400 49 / 1e-05 OVA1 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2) AT1G09620 47 / 0.0001 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090732 [exp] 652 / 0 AT5G16715 590 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.007G004100 [exp] 645 / 0 AT1G14610 1601 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.005G087850 [exp] 635 / 0 AT1G14610 1503 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.004G090666 [exp] 157 / 1e-44 AT5G16715 80 / 9e-19 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.010G014500 [exp] 173 / 5e-44 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.017G033200 [exp] 130 / 1e-30 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.007G126501 [exp] 105 / 4e-23 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.011G009600 [exp] 69 / 1e-11 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.004G090766 [exp] 54 / 6e-09 AT5G16715 44 / 3e-06 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028505 [exp] 1607 / 0 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10009139 [exp] 1190 / 0 AT5G16715 1128 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10033331 [exp] 635 / 0 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10034788 [exp] 629 / 0 AT1G14610 1508 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10043413 [exp] 180 / 3e-46 AT5G49030 1570 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10034171 [exp] 177 / 3e-45 AT5G49030 1530 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10024041 [exp] 139 / 4e-33 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041706 [exp] 135 / 6e-32 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10015552 [exp] 83 / 9e-16 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10024704 [exp] 56 / 3e-07 AT1G09620 1696 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00133 [poplar] [flax] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [poplar] [flax] DALR PF08264 [poplar] [flax] Anticodon_1 Anticodon-binding domain of tRNA ligase CL0298 [poplar] [flax] tRNA_bind_arm PF10458 [poplar] [flax] Val_tRNA-synt_C Valyl tRNA synthetase tRNA binding arm
Representative CDS sequence Show only first row Show all	>Potri.017G124500.1 pacid=42813245 polypeptide=Potri.017G124500.1.p locus=Potri.017G124500 ID=Potri.017G124500.1.v4.1 annot-version=v4.1 ATGATACTTCAAATGACACTCTCTTCTCCATTTCTCCTCTCTTCCTGTTCCTCTGCTCACAGACTCAACCCTCTTCTCTTCTCTAAACGACGCCATTGTC CCATCAAGTTCTCTCACTTCCCTTTCCATCTACTCACCAAACCCAGATTCCTTTCAGTTGCTGCTGCTGCAACAGAAAATGGTGTATTTACTTCTCCAGA AAATGCAAAGTCGTTTGATTTTTCTTCAGAAGAACGAATATACAATTGGTGGGAATCTCAAGGATTTTTTAAGCCAACTTTTGACCGGGGGAGTGATCCT TTTGTGGTATCAATGCCACCTCCAAATGTTACTGGTTCGTTGCACATGGGGCATGCAATGTTTGTGACTCTTGAGGATATCATGGTTAGATACAATCGTA TGAAGGGAAGACCAACACTGTGGCTTCCTGGTACTGATCATGCCGGTATTGCAACTCAGTTGGTTGTTGAAAAAATGCTTGCATCTGAAGGAATCAAAAG GACTGATCTGAGCAGAGATGAGTTCACAAAACGAGTTTGGGAGTGGAAAGAGAAATATGGTGGAACTATTACAAATCAGATTAAGAGACTCGGTGCTTCC TGTGATTGGACTAGAGAGCGTTTCACCCTTGATGAGCAGCTAAGTCAATCTGTGATTGAGGCTTTTATCAAGCTTCATGAGAAAGGCCTAATCTATCAAG GCTCGTATTTGGTTAACTGGTCTCCTAATCTACAGACTGCTGTTTCAGACTTGGAAGTAGAATATTCTGAGGAACCTGGCACTTTATATCACATCAAGTA TCGAGTTGCTGGACAGAGTGACTTCTTGACAGTTGCAACAACACGGCCTGAGACTTTATTTGGTGATGTAGCTATTGCTGTGAATCCCAAGGATGACCGC TATTCTAAGTTTATTGGGAAGATGGCAATTGTACCCATGACATATGGCCGCCATGTACCTATCATCGCTGACAGGCATGTTGATAAAGACTTTGGGACTG GTGTGTTGAAGATAAGCCCGGGACATGATCATAATGATTACTATCTTGCTAGAAAGCTTGGTCTCCCTATTCTTAACGTGATGAATAAGGATGGGACCCT TAATGAGGTTGCTGGATTGTACTGTGGTCTCGATCGATTTGAGGCACGGAAAAAACTGTGGTCAGAACTTGAGGAGACCGGGTTAGCTATCAAAAAGGAG CCGCACACTTTAAGGGTTCCTAGATCCCAACGTGGAGGAGAAATAATTGAGCCATTGGTAAGTAAACAGTGGTTTGTTACCATGGAGCCCTTGGCTGAGA AGGCTCTTCGTGCTGTTGAAAAAGGAGAGTTAACCATAATGCCTGAAAGATTTGAGAAGATTTATAATCATTGGCTGTCAAACATCAAGGATTGGTGTAT AAGCAGACAACTGTGGTGGGGGCACCGCATACCTGTGTGGTACATTGTAGGAAAAAACTGTGAAGAAGATTACATAGTTGCAAGGAATGCTGATGAAGCT CTTGAGAAAGCTCGTGAGAAGTATGGGAAAAATGTTGAAATTTATCAAGATCCAGATGTTCTGGATACTTGGTTTTCAAGTGCTCTATGGCCATTCAGTA CTCTTGGTTGGCCAGATGTTTCAGCAGAGGATTTTAAGAAGTTTTATCCTACAACAATGCTTGAAACTGGGCATGACATTTTGTTCTTTTGGGTGGCAAG GATGGTCATGATGGGAATTGAGTTTACTGGGACTGTTCCATTCTCATATGTTTATCTTCATGGGCTTATCCGGGACTCGCAGGGACGGAAAATGTCCAAA ACACTTGGTAACGTAATAGATCCCCTTGATACAATCAAAGAGTTTGGCACTGATGCTCTGCGATTCACTATTTCTCTAGGAACTGCTGGCCAGGACCTTA ATTTGTCTACTGAGAGGTTGACTGCCAACAAGGCCTTCACCAACAAACTGTGGAATGCGGGCAAGTTTGTGCTACAGAACATGCCTAGTCAAACTGATGT ATCTGCTTGGGAAGCTATTAGGAATTGTAAGTTTGACAAAGAGGAGTCTGTTCTCAGGCTACCTTTACCAGAATGTTGGGTGGTGTCAGAACTTCATGTT CTTATTGACATGGTCACAGCGAGCTATGATAAGTTTTTCTTTGGAGATGTTGGGAGGGAAATATATGATTTCTTCTGGAGTGATTTTGCTGATTGGTATA TCGAAGCCAGTAAAGCTCGCCTTTACCAGTCTGGAGCCAATTCAGCTTGTTCAGAGGCACAGGCAGTTCTATTGTATGTTTTCAAAAATGTATTGAAATT GCTACATCCATTCATGCCATTTGTCACTGAAGAACTATGGCAGGCACTCCCCGACCCGAAAGAAGCACTTATAGTATCTCCTTGGCCCCAGACTTCACTT CCACGGTTTCCCAACTCCATAAAAAAATTTGAAAATTTCCAAGCTTTGACTAGAGCAATCCGCAATGCTCGAGCAGAATACTCAGTTGAGCCAGCCAAGC GTATATCTGCATCTATAGTTGCAAGTGAAGAAGTCATCCAATACATATCTAACGAGAAGGAAGTCTTAGCTCTTCTTTCCAGGCTAGATCTACAAAATAT CCATTTCACAGATTCTCCTCCAGGGGATGCAAACCAGTCGGTACATCTGGTTGCTAGCGAGGGACTGGAAGCTTACCTTCCTCTTGCAGATATGGTCAAT ATATCTGCTGAAGTCGAACGCCTTTCAAAGCGCCTCTCCAAGATGCAAGTGGAGTATGACGGACTTGCTGCTCGTCTCAGTTCCCGGAAATTTGTAGAGA AAGCTCCTGAGGATGTTGTCCGTGGGGTTCGAGAAAAGGCAGCAGAAGCAGAGGAGAAGATAAAACTCACCAAGAACCGGTTAGCTTTCCTAAAATCCTC TAGTCTGGTGTCACAATAG
AA sequence Show only first row Show all	>Potri.017G124500.1 pacid=42813245 polypeptide=Potri.017G124500.1.p locus=Potri.017G124500 ID=Potri.017G124500.1.v4.1 annot-version=v4.1 MILQMTLSSPFLLSSCSSAHRLNPLLFSKRRHCPIKFSHFPFHLLTKPRFLSVAAAATENGVFTSPENAKSFDFSSEERIYNWWESQGFFKPTFDRGSDP FVVSMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWLPGTDHAGIATQLVVEKMLASEGIKRTDLSRDEFTKRVWEWKEKYGGTITNQIKRLGAS CDWTRERFTLDEQLSQSVIEAFIKLHEKGLIYQGSYLVNWSPNLQTAVSDLEVEYSEEPGTLYHIKYRVAGQSDFLTVATTRPETLFGDVAIAVNPKDDR YSKFIGKMAIVPMTYGRHVPIIADRHVDKDFGTGVLKISPGHDHNDYYLARKLGLPILNVMNKDGTLNEVAGLYCGLDRFEARKKLWSELEETGLAIKKE PHTLRVPRSQRGGEIIEPLVSKQWFVTMEPLAEKALRAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKNCEEDYIVARNADEA LEKAREKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSK TLGNVIDPLDTIKEFGTDALRFTISLGTAGQDLNLSTERLTANKAFTNKLWNAGKFVLQNMPSQTDVSAWEAIRNCKFDKEESVLRLPLPECWVVSELHV LIDMVTASYDKFFFGDVGREIYDFFWSDFADWYIEASKARLYQSGANSACSEAQAVLLYVFKNVLKLLHPFMPFVTEELWQALPDPKEALIVSPWPQTSL PRFPNSIKKFENFQALTRAIRNARAEYSVEPAKRISASIVASEEVIQYISNEKEVLALLSRLDLQNIHFTDSPPGDANQSVHLVASEGLEAYLPLADMVN ISAEVERLSKRLSKMQVEYDGLAARLSSRKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKSSSLVSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.017G124500 [exp]	0	1
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	2.00	0.9073
AT1G19720			Pentatricopeptide repeat (PPR-...		Potri.002G030200 [exp]	2.44	0.8860
AT4G31210			DNA topoisomerase, type IA, co...		Potri.006G279700 [exp]	3.00	0.8979
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Potri.018G103700 [exp]	3.00	0.8761
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Potri.010G171300 [exp]	3.87	0.8923
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Potri.009G149100 [exp]	5.83	0.8998
					Potri.018G138206 [exp]	7.21	0.8931
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	10.95	0.8480	Pt-PHYB.1
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Potri.018G081500 [exp]	11.48	0.8304
AT3G10690		GYRA	DNA GYRASE A (.1)		Potri.010G247000 [exp]	12.00	0.8456

Compare expression of checked genes

Potri.017G124500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.