Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HBGGPPS2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 388 / 2e-134 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 383 / 1e-132 Terpenoid synthases superfamily protein (.1) AT2G23800 361 / 8e-124 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT2G18640 353 / 1e-120 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G14550 346 / 4e-118 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT3G14530 344 / 2e-117 Terpenoid synthases superfamily protein (.1) AT3G14510 338 / 4e-116 Polyprenyl synthetase family protein (.1) AT3G29430 336 / 4e-114 Terpenoid synthases superfamily protein (.1) AT3G32040 325 / 9e-110 Terpenoid synthases superfamily protein (.1) AT3G20160 322 / 1e-108 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090600 [exp] 613 / 0 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 481 / 3e-171 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 406 / 1e-141 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 399 / 1e-138 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.009G139600 [exp] 234 / 2e-74 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.004G179628 [exp] 230 / 7e-73 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 109 / 2e-26 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.015G043400 [exp] 96 / 2e-22 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1) Potri.011G099500 [exp] 96 / 1e-21 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028509 [exp] 457 / 2e-161 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 441 / 3e-155 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 432 / 8e-152 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 427 / 2e-148 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 402 / 7e-140 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 387 / 5e-134 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 371 / 7e-128 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 367 / 5e-126 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 323 / 6e-111 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009136 [exp] 212 / 9e-69 AT2G18620 177 / 1e-55 Terpenoid synthases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF00348 [poplar] [flax] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Potri.017G124600.2 pacid=42813103 polypeptide=Potri.017G124600.2.p locus=Potri.017G124600 ID=Potri.017G124600.2.v4.1 annot-version=v4.1 ATGGCCTTCTTCTCTGTAACAATTTCTTGCTACGACAATTTACTTCTGAAAAAATCCATCAATGGCCTATACACCCAACCTAGAGCCTCATTAGACCACA TCAAGTTTTTTCCCATGAAAACTCAAGCAACCTATGCTGCAAACCCATCTTTCGAGCAATCGTTTAGAGCCCACGAAGAAAACAACAAGCCACAAAAGGT CCCTTTACCGCCATTCGGATTTAAGGAGTACATGATCCGGAAGGGAAATCAAGTGAACAAAGCACTAGATGAGGCAGTGCCCTTGCAACATCCCAGAAAA ATCCATGAAGCCATGAGATATTCTCTCCTTGCAGGTGGAAAGCGTGTACGTCCAATTTTATGCATTGCTTCGTGTGAATTAGTGGGAGGAGATGAGGAAT TAGCAATGCCAACGGCTTGTGCACTGGAGATGATTCACACCATGTCGCTAATCCATGATGATCTTCCTTGTATGGACAATGATGATCTTAGACGAGGTAT GCCCACAAGCCATAAAGTTTTTGGTGAAGATACAGCAGTTCTTGCTGGTGATGCACTCCTAGCACTTGCCTTTGAGCACGTAGCTAGAAATACCAAGAAT GTCTCGTCGGACCGCATGGTCCAAGCCCTTGCTGAGCTTGGATCCGCTGTTGGATCGAAAGGTCTTGTGGCAGGTCAGGTTGTGGACATTGAAAGTGAGG GTAAAGAAGTGAGTTTGAGCACACTGGAGTACATTCATGTCCATAAAACAGCAAAGCTTTTAGAGGCAGCAGTTGTTTGTGGGGCAATAATGGGAGGGGC AGATGCTACAAGCGTTGAAAGACTTAGAAAGTATGCTAGATCTATCGGATTGTTGTTTCAGGTGGTGGATGATATATTGGATATGACCAAGTCCTCCGAG GAGCTAGGAAAGACCGCCGGCAAGGATTTGACCAGTGACAAGGCTACATACCCTAAGCTGATCGGCATAGATGAGGCCAAGAAATTTGCTGCCCAGTTGA CTGATCAAGCTAATCAAGAACTTGGTTTCTATGATCCTGTTAAGGCTGCCCCATTGTACCATTTGGCTAGCTATATTGCTAGTCGACAAAATTAA
AA sequence Show only first row Show all	>Potri.017G124600.2 pacid=42813103 polypeptide=Potri.017G124600.2.p locus=Potri.017G124600 ID=Potri.017G124600.2.v4.1 annot-version=v4.1 MAFFSVTISCYDNLLLKKSINGLYTQPRASLDHIKFFPMKTQATYAANPSFEQSFRAHEENNKPQKVPLPPFGFKEYMIRKGNQVNKALDEAVPLQHPRK IHEAMRYSLLAGGKRVRPILCIASCELVGGDEELAMPTACALEMIHTMSLIHDDLPCMDNDDLRRGMPTSHKVFGEDTAVLAGDALLALAFEHVARNTKN VSSDRMVQALAELGSAVGSKGLVAGQVVDIESEGKEVSLSTLEYIHVHKTAKLLEAAVVCGAIMGGADATSVERLRKYARSIGLLFQVVDDILDMTKSSE ELGKTAGKDLTSDKATYPKLIGIDEAKKFAAQLTDQANQELGFYDPVKAAPLYHLASYIASRQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.017G124600 [exp]	0	1	Pt-HBGGPPS2.1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G117050 [exp]	16.61	0.8853
AT2G44930			Plant protein of unknown funct...		Potri.014G054100 [exp]	18.49	0.8518
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.017G122900 [exp]	22.18	0.8730
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.009G089500 [exp]	39.03	0.8668
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027200 [exp]	60.00	0.8083
AT2G41040			S-adenosyl-L-methionine-depend...		Potri.018G120000 [exp]	61.06	0.8173
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Potri.010G173300 [exp]	67.34	0.8184	ZIP1.1
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Potri.005G253800 [exp]	80.94	0.8431	Pt-GLR3.4
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Potri.008G079800 [exp]	109.19	0.8365	Pt-AS2.2
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G009900 [exp]	111.64	0.8068

Compare expression of checked genes

Potri.017G124600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.