Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27700 106 / 4e-26 Syntaxin/t-SNARE family protein (.1) AT4G30240 99 / 3e-23 Syntaxin/t-SNARE family protein (.1) AT2G18860 94 / 9e-22 Syntaxin/t-SNARE family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090200 [exp] 637 / 0 AT1G27700 97 / 1e-22 Syntaxin/t-SNARE family protein (.1) Potri.014G019100 [exp] 116 / 2e-29 AT1G27700 276 / 1e-91 Syntaxin/t-SNARE family protein (.1) Potri.018G093400 [exp] 100 / 1e-23 AT4G30240 263 / 8e-87 Syntaxin/t-SNARE family protein (.1) Potri.006G168800 [exp] 100 / 2e-23 AT4G30240 273 / 9e-91 Syntaxin/t-SNARE family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021360 [exp] 369 / 1e-125 AT4G30240 108 / 1e-26 Syntaxin/t-SNARE family protein (.1) Lus10017038 [exp] 355 / 2e-120 AT4G30240 105 / 3e-25 Syntaxin/t-SNARE family protein (.1) Lus10007766 [exp] 125 / 1e-32 AT1G27700 292 / 2e-98 Syntaxin/t-SNARE family protein (.1) Lus10018703 [exp] 123 / 7e-32 AT1G27700 290 / 2e-97 Syntaxin/t-SNARE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09177 [poplar] [flax] Syntaxin-6_N Syntaxin 6, N-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G125000.2 pacid=42813877 polypeptide=Potri.017G125000.2.p locus=Potri.017G125000 ID=Potri.017G125000.2.v4.1 annot-version=v4.1 ATGGCATCAAGTTTTCATGAATGGGAATCTGACCCCTTATTCTCAGCTGCTGAGGTGGTTCAAGACTCTGCTGACAGGATGGAGTCGCTTTTTCGCCTTC TATTGCATGAGCAGAATCTTGTTCGGAGTGAACATCCCGACCCAAGATTGCTTTCATCAATAGAATATCATAAGCGCGATCTAGCTACCATACTTGGAAC TGCGAAATGGCAGCTGGAAGATTTTGAAAGAGCTGTTAATTCATCAAGCATAGCGAACAAATCTCAAGCCAGAGAAGATGTGATTTCCAGGCACAGGCAG TTTATTATAGCCATTAGAGAACATATAAATGAAGTGGAGAAAAGTGTGAAGGGCCGTTCAATGGATGATTCCATGAGAAACTCTGAATGGGTTAATTTAA ATGACCAAGACAGAGATGTATTAGCATCATTTCTTACAGGAGGAAATCCCACTGAAAATATGCATCCTTATGAAATGGAAGAAAGTAGCATTTTGAGAAG ATTCCTTGATCCAAACTCAGGTGTTAGTTTAAAGGATAATGAAATTGTTGAGCATGACAGCAGAGAATTTGAGAGGGTAAAAATGACTGGAGTTGGGCAT GCTGATCATTATCTTGACTCTGCAAATGAGGATAAGAGAAATGTTGCTTCACATAACTCCACCGGATTAGGCTCAGATATGATGAACTCTCGGCAAGAGA TCCATCATGACAGGCATGTTGGTGATGATCACTGGGACCTGGAAGCTAATGAAGCCAAATCGAGGAGCTTCTTCCATGAGATCAAGTCAAGAGGTATCTA CAGCATCATGATCTTCTTTGGTTTCTTGAGCAACCTATGGACTGCTCATAGGAACAGAGTTGGTAGGAACTATACAAAGAGGTTGAAAGATGGAGAAGAA TATAGGCATTCGCCTACTTACACTGAATCGTCTCATTCTGCACAGGGCCATTGTCTAGGACAAATGCTAGGATCTGGATACAGAAGCCTCCAAGGAATAT GCTTTAGATTGCAATCAGAAGTAATGCACCTGGGCAGCAGCCTTGGGGCAAGATATCAAAGATTTCCCATTCATTTCGAATTTAATCAACATTCAATGAA AATGATATTGACAGCAATTCTTACCCTCATATTTTTGGGTATATTGGTGTCCAGAATTGCTTGA
AA sequence Show only first row Show all	>Potri.017G125000.2 pacid=42813877 polypeptide=Potri.017G125000.2.p locus=Potri.017G125000 ID=Potri.017G125000.2.v4.1 annot-version=v4.1 MASSFHEWESDPLFSAAEVVQDSADRMESLFRLLLHEQNLVRSEHPDPRLLSSIEYHKRDLATILGTAKWQLEDFERAVNSSSIANKSQAREDVISRHRQ FIIAIREHINEVEKSVKGRSMDDSMRNSEWVNLNDQDRDVLASFLTGGNPTENMHPYEMEESSILRRFLDPNSGVSLKDNEIVEHDSREFERVKMTGVGH ADHYLDSANEDKRNVASHNSTGLGSDMMNSRQEIHHDRHVGDDHWDLEANEAKSRSFFHEIKSRGIYSIMIFFGFLSNLWTAHRNRVGRNYTKRLKDGEE YRHSPTYTESSHSAQGHCLGQMLGSGYRSLQGICFRLQSEVMHLGSSLGARYQRFPIHFEFNQHSMKMILTAILTLIFLGILVSRIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.017G125000 [exp]	0	1
AT5G20130			unknown protein		Potri.006G010600 [exp]	1.41	0.8277
AT5G23340			RNI-like superfamily protein (...		Potri.006G238300 [exp]	27.92	0.7037
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Potri.011G061500 [exp]	28.19	0.7925	ARAC2.1
AT3G02880			Leucine-rich repeat protein ki...		Potri.004G066300 [exp]	40.62	0.7512
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Potri.003G022001 [exp]	65.62	0.7213
AT1G07060			unknown protein		Potri.001G281500 [exp]	68.08	0.7189
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.009G087200 [exp]	71.43	0.7514
AT3G17900			unknown protein		Potri.008G194632 [exp]	99.49	0.7232
AT2G30933			Carbohydrate-binding X8 domain...		Potri.002G059600 [exp]	101.23	0.7278
AT4G21780			unknown protein		Potri.011G000400 [exp]	122.27	0.7170

Compare expression of checked genes

Potri.017G125000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.