Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16710 389 / 4e-138 DHAR3 dehydroascorbate reductase 1 (.1) AT1G75270 280 / 8e-96 DHAR2 dehydroascorbate reductase 2 (.1) AT1G19570 273 / 6e-93 DHAR5, DHAR1, ATDHAR1 DEHYDROASCORBATE REDUCTASE 5, dehydroascorbate reductase (.1.2) AT1G19550 161 / 1e-49 Glutathione S-transferase family protein (.1) AT5G02790 67 / 5e-13 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT5G02780 55 / 1e-08 GSTL1 glutathione transferase lambda 1 (.1.2) AT1G10370 54 / 2e-08 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT2G29480 44 / 4e-05 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT3G62760 43 / 9e-05 ATGSTF13 Glutathione S-transferase family protein (.1) AT1G10360 43 / 0.0001 GST29, ATGSTU18 GLUTATHIONE S-TRANSFERASE 29, glutathione S-transferase TAU 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049300 [exp] 291 / 5e-100 AT1G75270 340 / 2e-120 dehydroascorbate reductase 2 (.1) Potri.010G211600 [exp] 221 / 2e-73 AT1G75270 253 / 5e-87 dehydroascorbate reductase 2 (.1) Potri.008G046800 [exp] 63 / 2e-11 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1) Potri.006G133500 [exp] 61 / 1e-10 AT5G02790 325 / 1e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.004G080400 [exp] 57 / 2e-09 AT1G78380 231 / 5e-77 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436500 [exp] 53 / 2e-08 AT1G78380 303 / 2e-105 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.016G023200 [exp] 52 / 8e-08 AT3G09270 189 / 1e-60 glutathione S-transferase TAU 8 (.1) Potri.006G024200 [exp] 50 / 3e-07 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061600 [exp] 50 / 3e-07 AT2G29420 172 / 7e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009135 [exp] 394 / 2e-138 AT5G16710 372 / 5e-130 dehydroascorbate reductase 1 (.1) Lus10028510 [exp] 384 / 6e-133 AT5G16710 352 / 2e-120 dehydroascorbate reductase 1 (.1) Lus10023442 [exp] 280 / 2e-95 AT1G75270 317 / 5e-111 dehydroascorbate reductase 2 (.1) Lus10023441 [exp] 270 / 8e-92 AT1G75270 327 / 3e-115 dehydroascorbate reductase 2 (.1) Lus10040320 [exp] 278 / 6e-91 AT1G75270 320 / 4e-108 dehydroascorbate reductase 2 (.1) Lus10019895 [exp] 64 / 4e-11 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10040347 [exp] 59 / 1e-09 AT3G55040 290 / 8e-98 glutathione transferase lambda 2 (.1) Lus10030020 [exp] 57 / 2e-09 AT1G17180 238 / 1e-79 glutathione S-transferase TAU 25 (.1) Lus10005367 [exp] 56 / 3e-09 AT2G02390 284 / 4e-98 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10020519 [exp] 56 / 4e-09 AT2G02390 283 / 2e-97 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF13410 [poplar] [flax] GST_C_2 Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G125100.1 pacid=42813611 polypeptide=Potri.017G125100.1.p locus=Potri.017G125100 ID=Potri.017G125100.1.v4.1 annot-version=v4.1 ATGTCGACTGCAAGAATCCAACCAACAGTAACAGCAGCTTGTGTTCTGTCTTCCACAATCAAACACCACTTCGGTTTAACCTCTCTCCGACTCCCTACGA ACCACTCTGCTGCTTTTAGACGCCAAAGAATCAAAAGAAACCTCACTGTTTCAATGTCCGCTACTTCAGTTTCTGAACCTCTTGAAATCTGTGTCAAAGC TTCTCTTACTGTCCCTGATAAACTTGGTGACTGTCCTTTTTGTCAAAGGGTATTGCTTACTTTGGAGGAAAAGAATCTGCCTTATGACATGAAGTTTGTT GATTTGGGGAACAAACCTGAATGGTTCTTGAAACTAAACCCAGATGGTAAAGTTCCTGTGATAAAGTTTGAGGAGAACTGGGTTTCAGATTCAGATGTTA TCACACAAGCATTGGAAGAAAAGTTTCCAGATCCACCATTGGCAATTCCACCTGAAAAGGCTTCAGTTGGCTCAAAGATCTTCTCCACATTTATTGGATT TCTTAAAAGCAAAGACCCTGGTGATGGAACAGAGCAGGCATTGCTCGATGAGCTTAGTGCTTTTAACGATCATATCAAAGAGAATGGCCCTTTTATCAAC GGGGAAAAAGTTTCTGCAGCTGATTTGGCCCTTGGACCGAAGCTGTACCATCTAGAGATTGCTCTTGGGCATTATAAGAACTGGTCAGTTCCAGAGTCAC TTCCCTACGTCAAATCCTACTTGAAGGAAATCTTCTCCAGGGATTCATTTGTTAACACACGTGCTTTGCCAGAGGATGTCATTGCCGGTTGGCGCCCAAA AGTCATGGGTTAA
AA sequence Show only first row Show all	>Potri.017G125100.1 pacid=42813611 polypeptide=Potri.017G125100.1.p locus=Potri.017G125100 ID=Potri.017G125100.1.v4.1 annot-version=v4.1 MSTARIQPTVTAACVLSSTIKHHFGLTSLRLPTNHSAAFRRQRIKRNLTVSMSATSVSEPLEICVKASLTVPDKLGDCPFCQRVLLTLEEKNLPYDMKFV DLGNKPEWFLKLNPDGKVPVIKFEENWVSDSDVITQALEEKFPDPPLAIPPEKASVGSKIFSTFIGFLKSKDPGDGTEQALLDELSAFNDHIKENGPFIN GEKVSAADLALGPKLYHLEIALGHYKNWSVPESLPYVKSYLKEIFSRDSFVNTRALPEDVIAGWRPKVMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Potri.017G125100 [exp]	0	1
AT5G17870		PSRP6	plastid-specific 50S ribosomal...		Potri.002G112500 [exp]	1.41	0.9613
					Potri.001G230200 [exp]	1.41	0.9657
AT4G08280			Thioredoxin superfamily protei...		Potri.002G085200 [exp]	4.47	0.9289
AT2G41250			Haloacid dehalogenase-like hyd...		Potri.006G040800 [exp]	4.47	0.9437
AT5G41761			unknown protein		Potri.003G136700 [exp]	8.00	0.9402
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Potri.002G031800 [exp]	10.09	0.9128
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.012G040900 [exp]	10.39	0.9222
AT4G28210		EMB1923	embryo defective 1923 (.1)		Potri.013G146900 [exp]	12.00	0.9399
AT1G03600		PSB27	photosystem II family protein ...		Potri.005G206200 [exp]	12.00	0.9454
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G074300 [exp]	12.00	0.9304	HCQL2

Compare expression of checked genes

Potri.017G125100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.