Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39790 291 / 1e-98 5'-AMP-activated protein kinase-related (.1) AT1G27070 76 / 3e-15 5'-AMP-activated protein kinase-related (.1) AT5G03420 64 / 3e-11 5'-AMP-activated protein kinase-related (.1) AT4G16360 43 / 0.0001 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT1G09020 41 / 0.0006 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G034600 [exp] 70 / 3e-13 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.006G123300 [exp] 70 / 3e-13 AT5G03420 279 / 9e-86 5'-AMP-activated protein kinase-related (.1) Potri.008G194300 [exp] 69 / 7e-13 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028512 [exp] 359 / 3e-125 AT5G39790 297 / 5e-101 5'-AMP-activated protein kinase-related (.1) Lus10036706 [exp] 71 / 1e-13 AT1G27070 323 / 8e-105 5'-AMP-activated protein kinase-related (.1) Lus10037220 [exp] 63 / 8e-11 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1) Lus10037504 [exp] 45 / 2e-05 AT1G09020 195 / 5e-60 homolog of yeast sucrose nonfermenting 4 (.1) Lus10004490 [exp] 42 / 0.0003 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 42 / 0.0003 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10037424 [exp] 42 / 0.0005 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10006516 [exp] 41 / 0.0009 AT1G09020 648 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [poplar] [flax] GHD PF16561 [poplar] [flax] AMPK1_CBM Glycogen recognition site of AMP-activated protein kinase
Representative CDS sequence Show only first row Show all	>Potri.017G125400.19 pacid=42813788 polypeptide=Potri.017G125400.19.p locus=Potri.017G125400 ID=Potri.017G125400.19.v4.1 annot-version=v4.1 ATGGAGATAGGCACTACAAGGTGTTGTATTGGCAAACAAGTACCATGGTTTTCACGGAATTCACGAATGTTAGATGTGGAAAGCATCCATAAGCTTCCTT ATCATGTGTTTGGCTGCACCATTAAACCAAGCAACCTAAGGTTTGCTCATTCTTATTGGGGCTCTGCTAGGAAAAATTGGATGAGCAATGTATTGTGGAG AACATATACCATGCCTGTTAGTTTGGAGGAATCTTCGTCAGAACAGCCAGAAGACTATTCAGATGATGAAGGGAGTTCATCCGAGGATTTACCAGAAGAG CCTCTTGATCAATCATTGAGCAGTGATGAGTTGAAGGCACTGCTGCTTGATTCTCAGAGAAAAAACCTTACAAAAAAACTAAGTGAAGCCAATCAGCAAA ACCGGTTTCTCAAACGACAGCTGCATGTAATGGAGGATGCACTGGTAAACTTCAAAAGTGAACTTGCTGTGATGGAACTTGAAATTCAGGCTTTGGTCAC GCTGTCAGAAGAAATAGCTCAATATGAAATTCCAGAAGGGTCAAGAAAGATAAATGGGAAATACGTACAATCTCACCTGCTTTCACGCTTAAGAGTTCTC CAAGAAAAATTGAAGGAGCAAATAAAGGATGTGGATGCTGCAAAATCCAAGGAGGTATCCTTGTTCTGGTGTGGCATGGCAGAGAGTGTACAAGTAATGG GCTCCTTTGATGGCTGGAGTCAAGGGGAGCACTTATCACCAGAGTATGATGGTTCTTTTACTAAGTTCTCGGCAACATTAATGCTCAGACCTGGAAGGTA TGAAATCAAGTTCTTGGTGGATGGAGATTGGCAGCTGTCTCCTGAATATCCCACCATTGGCGAGGGACTGACAGAAAATAACTTGCTAATTGTTGAGTAG
AA sequence Show only first row Show all	>Potri.017G125400.19 pacid=42813788 polypeptide=Potri.017G125400.19.p locus=Potri.017G125400 ID=Potri.017G125400.19.v4.1 annot-version=v4.1 MEIGTTRCCIGKQVPWFSRNSRMLDVESIHKLPYHVFGCTIKPSNLRFAHSYWGSARKNWMSNVLWRTYTMPVSLEESSSEQPEDYSDDEGSSSEDLPEE PLDQSLSSDELKALLLDSQRKNLTKKLSEANQQNRFLKRQLHVMEDALVNFKSELAVMELEIQALVTLSEEIAQYEIPEGSRKINGKYVQSHLLSRLRVL QEKLKEQIKDVDAAKSKEVSLFWCGMAESVQVMGSFDGWSQGEHLSPEYDGSFTKFSATLMLRPGRYEIKFLVDGDWQLSPEYPTIGEGLTENNLLIVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39790			5'-AMP-activated protein kinas...		Potri.017G125400 [exp]	0	1
AT1G28100			unknown protein		Potri.003G163800 [exp]	2.23	0.8540
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Potri.008G152800 [exp]	4.47	0.8353
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Potri.005G174300 [exp]	5.09	0.7712
AT2G25100			Polynucleotidyl transferase, r...		Potri.008G019800 [exp]	6.48	0.8192
AT3G19850			Phototropic-responsive NPH3 fa...		Potri.010G170900 [exp]	8.36	0.7995
AT5G66450			Phosphatidic acid phosphatase ...		Potri.007G021600 [exp]	9.27	0.8503
AT1G69740		HEMB1	Aldolase superfamily protein (...		Potri.002G082300 [exp]	10.24	0.8457	Pt-ALAD.1
AT3G28760			unknown protein		Potri.017G080300 [exp]	10.39	0.7650
AT5G17570			TatD related DNase (.1)		Potri.013G073800 [exp]	10.39	0.7968
					Potri.016G004401 [exp]	15.49	0.7520

Compare expression of checked genes

Potri.017G125400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.