Plant FIBer expression Database

Potri.017G126100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26850 546 / 0 VTC2 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
AT5G55120 523 / 0 VTC5 VITAMIN C DEFECTIVE 5, galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G355600
[exp]
529 / 0 AT4G26850 624 / 0.0 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
Potri.011G087200
[exp]
522 / 0 AT4G26850 633 / 0.0 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009725
[exp]
553 / 0 AT4G26850 643 / 0.0 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase
PFAM info
Representative CDS sequence
>Potri.017G126100.1 pacid=42814348 polypeptide=Potri.017G126100.1.p locus=Potri.017G126100 ID=Potri.017G126100.1.v4.1 annot-version=v4.1
ATGGTGCTGACGATAAAGAAGGTTCCTACTGTGGTTTCAAATTATCAGGAGGAGAATTCTGAAAAGGGGTTTGAAGGGTGTGGCAGGAATTGCCTTGGGA
AGTGTTGCTTACCTGTGTCTAAGCTGCCTCTGTATGCATTCAAGGAAGACAATTCGAATTTGATTGGAAATAGTGTTGAGAAATCATCAGAAGAGCAGCC
TCATATGTGTTTCCTGCACAACCTGTTGCTGGGACAATGGGAGGATCGAATGAGCCGTGGCCTTTTCCGCTATGATGTAACTGCTTGTGATACAAAGATC
ATTCCTGGTAGATATGGTTTCATTGCGCAACTGAACAAGGGCCGCCATCTGAAGAAGAGACCCACTGAGTTCAGGGTTGATAAGGTGCTTCAGGATTTTG
ATGAGACTAAGTTCAATTTCACCAAAGTGGGACAAGAAGAAGTGCTTTTCAGGTTTGAAAAAAGCATTGACCACAACAGACATTTTTTTCCTAGTGCGCC
GCCTATAACAGCTGATTCCAACAGCTCAAGTGTTGTTGCTATCAATGTGAGTCCAATTGAGTATGGACATGTTCTCTTGATACCCCAAGTTCTCAATTGC
TTGCCTCAGAGGATTGATCATGGCAGCTTCTTACTTGCTCTTCATATGGCTAAAGAAGCAGCAGATCCTTTCTTTAGAGTGGGTTACAACAGTTTGGGTG
CTTTCGCCACAATTAATCACCTACACTTTCAAGCTTATTACTTAGCAGCACCCTTCCCTGTTGAGAAAGCTCCAACTAGAAGAATAATGACAATGAAGAG
TCCGCAAGATGAAGGAGTAATCGTTTCGCAGCTCCTGAATTATCCAGTGCGAGGTCTTGTCTTTGAGGGTGGAAGTACAGTTCAGGATCTATCTGATTCA
GTAGCTAGTTCTTGCATTTTCCTCCAGAACAACAATATCCCTTTCAATGTGCTCATTACTGATTGTGGAAGAAGAATTTTTCTCTTTCCACAGTGCTATG
CGGAGAAACAAGCACGCGGAGAAGCAAGCCAGGAGCTGCTGGACACTCAAGTTAATCCAGCCGTTTGGGAGATCAGCGGACATATAGTGCTGAAGAGACA
GGAGGATTTTGACGATGCCTCAGAAACATATGCGTGGAGACTTCTTGCTGAGGTTTCGCTATCAAACAAGAGATTCCATCAAGTAAAGGCTTATTTATTG
GAAGCAGCAGGCTTTCAGACAGAAATAGAGGAAAATAACAGAGATCTTGAGCGAGAACCCATCTATGAGCAACCTTCCCCTGAAGCTGTAGCACATTTAC
CCCAAGATTGCATGGTCTTTTATTGA
AA sequence
>Potri.017G126100.1 pacid=42814348 polypeptide=Potri.017G126100.1.p locus=Potri.017G126100 ID=Potri.017G126100.1.v4.1 annot-version=v4.1
MVLTIKKVPTVVSNYQEENSEKGFEGCGRNCLGKCCLPVSKLPLYAFKEDNSNLIGNSVEKSSEEQPHMCFLHNLLLGQWEDRMSRGLFRYDVTACDTKI
IPGRYGFIAQLNKGRHLKKRPTEFRVDKVLQDFDETKFNFTKVGQEEVLFRFEKSIDHNRHFFPSAPPITADSNSSSVVAINVSPIEYGHVLLIPQVLNC
LPQRIDHGSFLLALHMAKEAADPFFRVGYNSLGAFATINHLHFQAYYLAAPFPVEKAPTRRIMTMKSPQDEGVIVSQLLNYPVRGLVFEGGSTVQDLSDS
VASSCIFLQNNNIPFNVLITDCGRRIFLFPQCYAEKQARGEASQELLDTQVNPAVWEISGHIVLKRQEDFDDASETYAWRLLAEVSLSNKRFHQVKAYLL
EAAGFQTEIEENNRDLEREPIYEQPSPEAVAHLPQDCMVFY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G26850 VTC2 mannose-1-phosphate guanylyltr... Potri.017G126100
[exp]
0 1
AT4G01720 WRKY ATWRKY47, WRKY4... WRKY family transcription fact... Potri.002G186600
[exp]
1.41 0.8902 Pt-WRKY47.2
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.003G098900
[exp]
15.49 0.8679
AT3G59880 unknown protein Potri.007G145500
[exp]
16.09 0.8611
AT2G23770 protein kinase family protein ... Potri.010G078700
[exp]
18.24 0.8525
AT5G06740 Concanavalin A-like lectin pro... Potri.006G193000
[exp]
19.39 0.8775
AT5G44440 FAD-binding Berberine family p... Potri.011G162828
[exp]
22.95 0.8439
AT4G14640 CAM8, AtCML8 calmodulin-like 8, calmodulin ... Potri.005G052800
[exp]
25.27 0.8817 ACCAL.4
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.014G033550
[exp]
26.92 0.8720
AT2G42360 RING/U-box superfamily protein... Potri.019G091400
[exp]
32.98 0.8576
AT1G76490 HMGR1, HMG1, At... 3-HYDROXY-3-METHYLGLUTARYL COA... Potri.009G169900
[exp]
33.22 0.8449

Potri.017G126100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.