Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09700 120 / 6e-30 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) AT2G28380 100 / 6e-23 DRB2 dsRNA-binding protein 2 (.1) AT3G26932 92 / 3e-20 DRB3 dsRNA-binding protein 3 (.1.2) AT3G62800 90 / 1e-19 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT5G41070 87 / 1e-18 DRB5 dsRNA-binding protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G153200 [exp] 123 / 4e-31 AT1G09700 224 / 7e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Potri.002G111400 [exp] 123 / 4e-31 AT1G09700 214 / 7e-66 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Potri.014G015400 [exp] 108 / 4e-28 ND / Potri.005G045700 [exp] 100 / 2e-22 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.013G032400 [exp] 100 / 3e-22 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1) Potri.017G063700 [exp] 93 / 3e-20 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 91 / 1e-19 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.009G152900 [exp] 82 / 1e-16 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.019G038184 [exp] 80 / 4e-16 AT3G62800 145 / 5e-41 double-stranded-RNA-binding protein 4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000721 [exp] 102 / 3e-23 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10021471 [exp] 96 / 3e-21 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10035176 [exp] 93 / 2e-20 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10032007 [exp] 93 / 3e-20 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10023248 [exp] 92 / 1e-19 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10008862 [exp] 92 / 2e-19 AT1G09700 237 / 1e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10003362 [exp] 82 / 1e-17 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10008422 [exp] 73 / 3e-13 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10002619 [exp] 71 / 7e-13 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Potri.017G126700.6 pacid=42812978 polypeptide=Potri.017G126700.6.p locus=Potri.017G126700 ID=Potri.017G126700.6.v4.1 annot-version=v4.1 ATGGATAATCCGACCGAATCCGAACTCTCTAACCCAGCTTCACCTTCTCCAGCTCCTCCGGCTCTGGCTCCACCTCCTTGTACTACTCCTGATTTGGCTC CACATCCAGTTACATCTCAAGTAATAGCTCCAAATCAGGCGCCAGTTCCTGACCCGACCCCAAGTCAGGCGCCAGTTCCTGACCCGACCCCAAGCCCGGC GCCAGTTCATGAACCGACCCCAAGCCCAGCGCCAGTTCCTGACCCGACCCCAAATCCAGCTCCAGCTCCTGATTCCACTCTATCTCCGTCTCCGGCTGCC TCTACCACTACCCTTACGTCTCGGGTTTCTGAAAATATCTCTTTCTCAAAGAAATTAGTGAAAAAAGGCCTTCCGGACAACCTGATGTACAAGAATCGTC TGCAAGAATACACACAAAAATCATCTTTACAGCTCCCTGTATATCAAACTTTAAATGAAGGACCTGCTCATATGCCAAGGTTTAGATCGACTGTGTGGGT AGATGGAGCACGGTATAGATCCCAAAAAACTTTCTTGCATCGAAAAGCAGCTGAACAAGATGTTGCGAACCTTGCACTTGAGAGTATCCTAAAAAGAGTA AAGGATGAAGGATGTCCACTTCTACTTGGGGACACGGTGTTTTGCAAATCCATTCTGAATGAATTTGCAGTGAAGGTGAATCGTGAAAAACCTACTTACA ACACTGTTCAGTCGCCTGGGCTGCTGCCTGTTTTCATATCTACTTTGGTTTTTGATGGTGTAAGTTATACTGGTGATGCTGGCAGAAACAAGAAAGAGGC TGAGCAATTGGCAGCACGTGCTGTGATCCTTTCTCTTATAGGTAATTCTGGGTCATCAAAAATTCTTTATGAAATAATCAAGTCTAAAAGCAAACTCTAT GCTGCATTGGATAGGGTCAAGGACCCAAGCCATTCCCAACCCAACATTGTACCTGTGGCAGTAAAAGTTGGACATTGCTCTGAAACCACAGTCGATCAAG AGCAAGAGGTAAGCACTGCTGTTGTTAGGGATGCTGCACCAGTGAGTGCAAACATTGTACCTGTGGCAGTAAAAGTTGGACATTGCTCTGAAACCACAGT CGATCAAGAGCAAGAGGTAAGCACTGCTGTTGTTAGGGATGCTGTACCAGTGAGTGCAATTCCACCTGCAGCTTCAGGAATGCATCCTTCCCACCATGAC TCCAAGAGACCAAGACCAGATCTGCACCCTGTTTCAGAACAGCCTCTGGTTGTTGACTTTGGTTCTAGTTCAGCTAAAAAGAGGAGGAAGAACAAGAAAA AGGATAACAAAGAAACTGATACCCAGTTTCCTACTGATGCAATTCCTCTGAATCAAGCATCACCTTGTTCTGTAGCCCAATGA
AA sequence Show only first row Show all	>Potri.017G126700.6 pacid=42812978 polypeptide=Potri.017G126700.6.p locus=Potri.017G126700 ID=Potri.017G126700.6.v4.1 annot-version=v4.1 MDNPTESELSNPASPSPAPPALAPPPCTTPDLAPHPVTSQVIAPNQAPVPDPTPSQAPVPDPTPSPAPVHEPTPSPAPVPDPTPNPAPAPDSTLSPSPAA STTTLTSRVSENISFSKKLVKKGLPDNLMYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDVANLALESILKRV KDEGCPLLLGDTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVFISTLVFDGVSYTGDAGRNKKEAEQLAARAVILSLIGNSGSSKILYEIIKSKSKLY AALDRVKDPSHSQPNIVPVAVKVGHCSETTVDQEQEVSTAVVRDAAPVSANIVPVAVKVGHCSETTVDQEQEVSTAVVRDAVPVSAIPPAASGMHPSHHD SKRPRPDLHPVSEQPLVVDFGSSSAKKRRKNKKKDNKETDTQFPTDAIPLNQASPCSVAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.017G126700 [exp]	0	1
AT1G28320		DEG15	protease-related (.1)		Potri.011G056100 [exp]	2.44	0.9152
AT5G20260			Exostosin family protein (.1)		Potri.006G064800 [exp]	2.82	0.8991
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.014G144900 [exp]	4.69	0.8879	Pt-KUP3.1
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	5.00	0.9254
AT5G48730			Pentatricopeptide repeat (PPR)...		Potri.002G243600 [exp]	6.92	0.9116
AT2G43540			unknown protein		Potri.007G134400 [exp]	7.07	0.8963
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021400 [exp]	7.48	0.9044
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Potri.003G056600 [exp]	11.22	0.9127
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.005G066950 [exp]	11.95	0.8511
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.005G150400 [exp]	12.96	0.8924

Compare expression of checked genes

Potri.017G126700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.