Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G127800 [exp] 148 / 1e-42 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 138 / 4e-39 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 135 / 6e-38 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.017G138100 [exp] 117 / 1e-31 AT3G14470 397 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.017G136266 [exp] 96 / 3e-24 AT3G14470 412 / 2e-126 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 95 / 8e-24 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 92 / 1e-22 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G137700 [exp] 87 / 5e-21 AT3G14470 437 / 7e-136 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143433 [exp] 54 / 2e-09 AT3G14470 321 / 1e-94 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011278 [exp] 59 / 5e-11 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 49 / 2e-07 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 43 / 1e-05 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 40 / 0.0001 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 38 / 0.001 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G127501.1 pacid=42813850 polypeptide=Potri.017G127501.1.p locus=Potri.017G127501 ID=Potri.017G127501.1.v4.1 annot-version=v4.1 ATGGCTGATGCAGTTCTTTCTGCTCTCGCGACTACAATCATGGGGAACTTGAATTCCTCATTTCTTCAAGAGCTTGGACTTGCTGGGAGCCTAGAGACTG AGCTTGAAAATCTCAACCGCACGATCAGAACTATTCGAGCTGTGCTTCACGATGCTGAGGAGAAGCAGTGGAAGAGTGAGGCTATAAAATTGTGGCTCCG AGACCTCAAGGATGCAGCTTATGATGCTGATGATTTGCTAAGTGACTTTGCAAATGAAGCTCAGCGGCATCAGCAGCGAAGAGATCTCAAAAATCGAATG GGGTGCAGAGTCTCAACAACCTCAGAAAGTTGA
AA sequence Show only first row Show all	>Potri.017G127501.1 pacid=42813850 polypeptide=Potri.017G127501.1.p locus=Potri.017G127501 ID=Potri.017G127501.1.v4.1 annot-version=v4.1 MADAVLSALATTIMGNLNSSFLQELGLAGSLETELENLNRTIRTIRAVLHDAEEKQWKSEAIKLWLRDLKDAAYDADDLLSDFANEAQRHQQRRDLKNRM GCRVSTTSES

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.017G127501 [exp]	0	1
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Potri.002G108800 [exp]	2.44	1.0000
					Potri.003G194950 [exp]	3.00	1.0000
AT4G34880			Amidase family protein (.1)		Potri.004G169400 [exp]	4.24	0.9330
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.018G043500 [exp]	4.58	0.9490
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G172866 [exp]	4.89	0.9385
AT3G59850			Pectin lyase-like superfamily ...		Potri.007G144400 [exp]	6.00	0.8781
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G064900 [exp]	6.32	0.9302
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Potri.007G030300 [exp]	7.14	0.7652
AT2G32660		AtRLP22	receptor like protein 22 (.1)		Potri.001G437800 [exp]	7.21	0.8684
AT4G27300			S-locus lectin protein kinase ...		Potri.010G018050 [exp]	8.12	0.8896

Compare expression of checked genes

Potri.017G127501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.