Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03380 1694 / 0 DEG7, DEGP7 degradation of periplasmic proteins 7, DegP protease 7 (.1) AT3G03370 66 / 9e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G088600 [exp] 1565 / 0 AT3G03380 1442 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088700 [exp] 1446 / 0 AT3G03380 1365 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.018G001301 [exp] 48 / 3e-05 AT5G27660 119 / 4e-30 Trypsin family protein with PDZ domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028521 [exp] 1476 / 0 AT3G03380 1385 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10009122 [exp] 917 / 0 AT3G03380 814 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10042507 [exp] 658 / 0 AT3G03380 1144 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017637 [exp] 634 / 0 AT3G03380 618 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10033594 [exp] 588 / 0 AT3G03380 592 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017636 [exp] 226 / 2e-67 AT3G03380 226 / 3e-68 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10038155 [exp] 102 / 7e-24 AT3G03380 94 / 1e-21 degradation of periplasmic proteins 7, DegP protease 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0466 [poplar] [flax] PDZ-like PF12812 [poplar] [flax] PDZ_1 PDZ-like domain CL0466 [poplar] [flax] PDZ-like PF13180 [poplar] [flax] PDZ_2 PDZ domain CL0124 [poplar] [flax] Peptidase_PA PF13365 [poplar] [flax] Trypsin_2 Trypsin-like peptidase domain
Representative CDS sequence Show only first row Show all	>Potri.017G128300.2 pacid=42814246 polypeptide=Potri.017G128300.2.p locus=Potri.017G128300 ID=Potri.017G128300.2.v4.1 annot-version=v4.1 ATGGGAGACCCACTAGAAAGGCTAGGATCAGAAACAGAAATGGCGAGTCTTGAATCAACCATGAAAGAAGAACTCTGCATGGAAATCGACCCACCTTTCA AAGAAAGCGTAGCCACGGCGGAGGACTGGAGGAAAGCCCTTAACAAAGTGGTCCCTGCCGTTGTCGTCCTCCGTACCACTGCTTGTCGTGCTTTTGACAC CGAATCTGCTGGTGCTAGTTATGCTACTGGCTTTGTTGTTGATAAACGCCGTGGGATTATCCTCACTAACCGACATGTCGTCAAGGCTGGGCCTGTGGTG GCAGAGGCAATGTTTCTGAACCGTGAGGAGATTCCTGTGTATCCGATATATAGAGATCCTGTTCATGATTTTGGCTTCTTTAGGTATGATCCTGGGGCAA TTCAGTTTTTGAATTATGAAGAGATTCCTCTTGCTCCCGAGGCTGCTTGTGTTGGGTTGGAAATAAGGGTTGTTGGTAATGATAGTGGCGAGAAGGTTTC CATTTTGGCGGGGACTCTTGCTCGCTTGGATAGAGATGCACCTCACTATAAAAAGGATGGGTACAATGACTTCAATACATTCTACATGCAAGCTGCATCT GGAACTAAGGGTGGTTCAAGTGGTTCTCCAGTAATCGATTGGCAAGGCAGAGCAGTTGCTTTGAATGCTGGGAGCAAGTCTTCAAGTGCTTCAGCTTTTT TCTTACCATTAGAACGAGTTGTTAGGGCACTGGAATTTCTCCAAAAAGGAAGAAACTCGTATTCCAATAAGTGGGAGGCAGTTTCTATACCTCGTGGTAC GCTTCAGATGACATTTGTTCATAAAGGATTTGATGAGACACGCCGGCTGGGTCTTCAAAGTGAAACCGAGCAGATTGTGCGGCATGCATCACCACTTGAA GAAACTGGAATGCTTGTCGTCGACTCCGTGGTGCCTGGTGGCCCAGCTTATACACATTTGGAGCCAGGGGATATCCTTTTTCGTGTGAATGGAGAAGTGG TCACACAATTTCTGAAACTGGAGAATTTGCTCGATGACAGCGTTGACCAGAAAATTGTGTTGCAGATTGAGAGGGGTGGCACGTCATTGACTGTGAACTT AATGGTTCAGGATTTACATTCAATAACCCCTGACTACTTCCTAGAAGTCAGTGGTGCAGTGATTCATCCCCTATCTTACCAACAGGCAAGAAATTTCCGT TTCCATTGTGGCTTGGTGTACGTTTCAGAACCTGGATACATGCTATTTAGAGCTGGAGTTCCTCGCCATGCTATCATTAAGAAGTTTGCGGGTGAGGAGA TATCTCAACTTGATGAGCTAATCTCAGTTCTGTCGAAGCTATCTAGAGGTGCTCGAGTGCCCTTAGAATATATAAGTTACACAGATCGTCATCGAAGGAA GTCTGTCCTTGTCACAGTCGACCGCCATGAATGGTATGCCCCTCCACAGATATATACTCGTGATGACAGCTCTGGTTTATGGACAGCAAAGCCTGCTATA CAGCCTGATTCCCTGCAGCTATCATCTGCTGTTAAATATATGGGACAAAGCGTAACGAGCCAAACTGTTCTCCCAAGTGGTGAGGGAACTCATGTGGAAC ATGTAAATCTAGGTAACAACCTAGAGTTGGCTGATGGTGTTACTTGTATGGAATCAAGTGATGACCATTCTTCTGAAGAACCACATTCTCGGGAAGAATC TGATGTTGGAACAAAGAAACGGAGGGTATCAGATTTGTCTGCCAACGGAATTGCTGTTACTGATTGTTCCTTGTCTGAAACTGGAGAAGTTAAGTCAGTC GATTCAAGTACCATGGAAAGTGAAGTATCAAGAGACTATCAAGGTGCAATGACAGTGACAACTAATGCTTCATTTGCAGAAAGTGTGATAGAGCCTACGC TTGTGATGTTTGAGGTTCATGTTCCACAATCAATAATGCTTGATGGTGTTCATTCACAACATTTTTTTGGAACTGGTGTGATTGTTTATCATTCTCAAGA CTTGGGATTAGTTGCAGTGGATAGGAACACTGTTGCAATATCTGCATCAGATGTGATGCTATCCTTCGCTGCTTTTCCAATTGAAATCCCTGGGGAGGTG GTTTTTCTCCATCCTGTTCACAATTATGCTCTTGTTGCTTATGACCCCTCGGCTCTAGGAGCTGTTGGTGCCTCAATGGTTCGTGCTGCTGAATTGCTTC CTGAGCCAGCATTACGCCGCGGGGATTCTGTCTACCTTGTGGGGTTAAATAGGAGTCTGCATGCGACATCTAGGAAATCCATTGTGACCAATCCTTATGC TGCTTTGAATATTAGCTCAGCTGATTGTCCACGATATAGAGCAACGAACATGGAAGTCATTGAACTCGATACTGATTTTGGGAGTTCATTTTCGGGTGTG CTAACTGATGAGCAAGGAAGGGTTCAAGCCATATGGGGAAGCTTTTCAACTCAGTTGAAATTTGGTTGTAGTACGTCAGAAGATCATCAGTTTGTTAGAG GCATCCCTGTTTATGCTGTAAGCCAAGTTCTTGATAAAATCATAAATGGTGCAAAGGGACCACCTCTTCTGATAAATGGTGTCAGTAGGCCAATGCCACT TGTCAGGATTTTAGAGGTTGAGCTTTATCCAACTTTGCTTTCAAAAGCTCGAAGTTTTGCTCTGAGCGATCACTGGGTCCAAGCTCTTGTCAAGAAAGAT CCAGTTAGAAGACAAGTTTTACGTGTCAAAGGTTGTTTGGCTGGATCAAAAGCTGAAAATCTATTAGAACAAGGAGACATGATTTTGGCGGTGGACAAAG AGCCAGTTACTTGCTTTTGTGACATAGAAAATGCTTGCCAAGCATTGGACAAGTGTAGTGACAATGATGGAAAGCTCAAACTGACTATCTTTCGACAGGG ACGTGAAATTGATCTTATTGTGGGAACAGATGTCAGGGATGGGAATGGCACAACACGTGTAATAAATTGGTGTGGGTGTATAGTTCAGGATTCTCATCCA GCAGTGCGTGCCCTTGGGTTTCTTCCAGAAGAAGGTCATGGTGTGTATGTGGCAAGGTGGTGTCATGGAAGCCCGGTACACAGATATGGTCTATATGCTC TTCAATGGATTGTTGAAATCAATGGAAAACCGACGCCTGATTTAGACGCCTTCCTTAATGTTACCAAGGAGTTAGGGCATGGAGAGTTTGTCCGTGTAAA GACTGTCCACCTGAATGGGAAGCCGCGAGTGTTGACATTAAAGCAAGATCTACACTACTGGCCTACATGGGAGCTCCGATTTGATCCCACTAATGCAGTG TGGCGCCGAGAAACAATTAAGGGACTAGATTACAGTGTGTTATCTGAATGA
AA sequence Show only first row Show all	>Potri.017G128300.2 pacid=42814246 polypeptide=Potri.017G128300.2.p locus=Potri.017G128300 ID=Potri.017G128300.2.v4.1 annot-version=v4.1 MGDPLERLGSETEMASLESTMKEELCMEIDPPFKESVATAEDWRKALNKVVPAVVVLRTTACRAFDTESAGASYATGFVVDKRRGIILTNRHVVKAGPVV AEAMFLNREEIPVYPIYRDPVHDFGFFRYDPGAIQFLNYEEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAAS GTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALEFLQKGRNSYSNKWEAVSIPRGTLQMTFVHKGFDETRRLGLQSETEQIVRHASPLE ETGMLVVDSVVPGGPAYTHLEPGDILFRVNGEVVTQFLKLENLLDDSVDQKIVLQIERGGTSLTVNLMVQDLHSITPDYFLEVSGAVIHPLSYQQARNFR FHCGLVYVSEPGYMLFRAGVPRHAIIKKFAGEEISQLDELISVLSKLSRGARVPLEYISYTDRHRRKSVLVTVDRHEWYAPPQIYTRDDSSGLWTAKPAI QPDSLQLSSAVKYMGQSVTSQTVLPSGEGTHVEHVNLGNNLELADGVTCMESSDDHSSEEPHSREESDVGTKKRRVSDLSANGIAVTDCSLSETGEVKSV DSSTMESEVSRDYQGAMTVTTNASFAESVIEPTLVMFEVHVPQSIMLDGVHSQHFFGTGVIVYHSQDLGLVAVDRNTVAISASDVMLSFAAFPIEIPGEV VFLHPVHNYALVAYDPSALGAVGASMVRAAELLPEPALRRGDSVYLVGLNRSLHATSRKSIVTNPYAALNISSADCPRYRATNMEVIELDTDFGSSFSGV LTDEQGRVQAIWGSFSTQLKFGCSTSEDHQFVRGIPVYAVSQVLDKIINGAKGPPLLINGVSRPMPLVRILEVELYPTLLSKARSFALSDHWVQALVKKD PVRRQVLRVKGCLAGSKAENLLEQGDMILAVDKEPVTCFCDIENACQALDKCSDNDGKLKLTIFRQGREIDLIVGTDVRDGNGTTRVINWCGCIVQDSHP AVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKPTPDLDAFLNVTKELGHGEFVRVKTVHLNGKPRVLTLKQDLHYWPTWELRFDPTNAV WRRETIKGLDYSVLSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.017G128300 [exp]	0	1
AT3G13330		PA200	proteasome activating protein ...		Potri.011G167700 [exp]	1.00	0.8991
AT1G14850		NUP155	nucleoporin 155 (.1)		Potri.008G134800 [exp]	1.73	0.8793
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	2.00	0.8853
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Potri.007G092200 [exp]	2.82	0.8764
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.005G146400 [exp]	3.00	0.8548
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Potri.008G008100 [exp]	4.00	0.8608
AT1G60560			SWIM zinc finger family protei...		Potri.007G106000 [exp]	7.48	0.8060
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.015G079300 [exp]	8.00	0.8423
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.001G271200 [exp]	9.53	0.8515
AT5G01500		TAAC	thylakoid ATP/ADP carrier (.1)		Potri.006G099800 [exp]	10.67	0.8169

Compare expression of checked genes

Potri.017G128300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.