Plant FIBer expression Database

Potri.017G128400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G128400.1 pacid=42814588 polypeptide=Potri.017G128400.1.p locus=Potri.017G128400 ID=Potri.017G128400.1.v4.1 annot-version=v4.1
ATGGCCAGAAGTTTCATCCATGTAACCTCTATCCTAGTTTGTCTCATAACACTAGCAATTTCACCAGCCCAATTTGTGGCACAAACTACTGTCCCTAGCC
AAAATACAGAATACTATTCACCCCCACCACCTTATAGTACTCCCGGTGTGTGCCCCTACCCTTGTCGGCCACCACCTATACCTACTACAATTTGCCCGCC
TCCGCCTCCGCCACCTTATCTGCCGCAATTACCGCCACCACTGCCCTTCTATCCGTCGCCTGGAGGGTATGTGCCAAATATCCCCCCATTTTGGAATTAT
GCACCTCCTCCTCCAAACCCCATATTGCCTTACTTTCCATGGTATTACATGTATCCTCCACCACCACCGGACTATTCACTAGCAATGAGTCCTAAGGGGA
TTCCAATGGCAATGATTCCATGCATAATTATGGTATCGTTGTTTATCTCTTGGTTCTAA
AA sequence
>Potri.017G128400.1 pacid=42814588 polypeptide=Potri.017G128400.1.p locus=Potri.017G128400 ID=Potri.017G128400.1.v4.1 annot-version=v4.1
MARSFIHVTSILVCLITLAISPAQFVAQTTVPSQNTEYYSPPPPYSTPGVCPYPCRPPPIPTTICPPPPPPPYLPQLPPPLPFYPSPGGYVPNIPPFWNY
APPPPNPILPYFPWYYMYPPPPPDYSLAMSPKGIPMAMIPCIIMVSLFISWF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G128400
[exp]
0 1
AT5G57800 CER3, FLP1, YRE... FACELESS POLLEN 1, ECERIFERUM ... Potri.006G177500
[exp]
1.73 0.9871
AT1G30700 FAD-binding Berberine family p... Potri.001G462400
[exp]
2.23 0.9908
AT5G62360 Plant invertase/pectin methyle... Potri.015G128200
[exp]
2.82 0.9860
AT1G30700 FAD-binding Berberine family p... Potri.001G462532
[exp]
3.74 0.9882
Potri.001G001000
[exp]
7.74 0.9739
AT1G45616 AtRLP6 receptor like protein 6 (.1) Potri.012G008666
[exp]
8.36 0.9859
AT1G24470 ATKCR2, KCR2 beta-ketoacyl reductase 2 (.1) Potri.008G181600
[exp]
11.83 0.9706
AT3G05660 AtRLP33 receptor like protein 33 (.1) Potri.012G029000
[exp]
14.49 0.9850
AT1G61350 ARM repeat superfamily protein... Potri.011G042300
[exp]
14.49 0.9114
AT1G17840 AtABCG11, WBC11... DESPERADO, CUTICULAR DEFECT AN... Potri.017G155300
[exp]
15.09 0.9744

Potri.017G128400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.