Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37850 534 / 0 SOS4, ATSOS4 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) AT1G22940 51 / 5e-07 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015700 [exp] 50 / 1e-06 AT1G22940 710 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009119 [exp] 533 / 0 AT5G37850 531 / 0.0 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10000451 [exp] 489 / 7e-176 AT5G37850 473 / 3e-170 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10010977 [exp] 483 / 1e-173 AT5G37850 471 / 2e-169 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10028527 [exp] 482 / 1e-172 AT5G37850 464 / 8e-166 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10015466 [exp] 46 / 3e-05 AT1G22940 734 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1) Lus10001365 [exp] 45 / 7e-05 AT1G22940 720 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF08543 [poplar] [flax] Phos_pyr_kin Phosphomethylpyrimidine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G129000.5 pacid=42814480 polypeptide=Potri.017G129000.5.p locus=Potri.017G129000 ID=Potri.017G129000.5.v4.1 annot-version=v4.1 ATGCTGCTTCGCTCTTGCCGTGTAATCCCTCGAGAAACTCATCGCATTTTCATTTCCAGATCGATCAGTTCGAGAAAGTTCGAAATGGCGCCTCCGATCT TGTCCTTGGCTCTTCCTTCAGAGACCGGTCGCGTTCTCAGCATTCAATCGCATACTGTTCAGGGATATGTTGGAAATAAATCAGCTGTCTTTCCTCTCCA ACTATTGGGCTATGATGTTGATCCAGTCAATTCAGTACAGTTCTCAAATCACACAGGATATCCAACCTTTAAAGGACAAGTTTTAAATGGACAGCAACTA TGGGAGCTAATGGAAGGCCTCAAAGCAAATGACTTGCTGTATTATACTCATTTATTAACAGGCTATATTGGTTCTGTTTCATTCTTGAACACCGTATTGG AAGTTGTCAAGAAGCTTCGTTCTATAAATCCAAAACTTACATATGTTTGTGATCCTGTTCTGGGTGATGAAGGGAAGCTTTATGTTCCACCAGAGTTGGT TGAAGTATATCGTGAGAAGGTTGTTCCAGTGGCTTCAATGCTGACCCCTAACCAATTTGAAGCAGAACAATTGACTGGATTCAGGATTGTATCTGAACAT GATGGCCGGGAAGCTTGTAACAAGCTTCATGCTGCTGGACCTGCAAAGGTTGTGATAACAAGCATCAATATAGATGGTCACCTTCTTCTTATTGGCAGTC ATGAAAAGGAAAAGGGCCAGTCTCCTGATCAATTCAAGATTGTGATACCCAAAATTCCTGCATATTTTACAGGAACAGGGGATCTAATGACTGCGCTCCT GCTTGGATGGAGTAATAAACACCCAGATGATCTTGCAAAGGCAGCAGAGCTCGCAGTATCAAGCTTGCAGGCAGTTCTGCAGAGGACGTTGGATGATTAT AAAACAGCTGGGTATGATCCCCAGTCAAGCAGTTTGGAAATTAGATTGATCCAAAGCCAGGATGACATTCGCCACCCACAAATTAAATTTAAAGCTGAAA ACTACTCCTAA
AA sequence Show only first row Show all	>Potri.017G129000.5 pacid=42814480 polypeptide=Potri.017G129000.5.p locus=Potri.017G129000 ID=Potri.017G129000.5.v4.1 annot-version=v4.1 MLLRSCRVIPRETHRIFISRSISSRKFEMAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPVNSVQFSNHTGYPTFKGQVLNGQQL WELMEGLKANDLLYYTHLLTGYIGSVSFLNTVLEVVKKLRSINPKLTYVCDPVLGDEGKLYVPPELVEVYREKVVPVASMLTPNQFEAEQLTGFRIVSEH DGREACNKLHAAGPAKVVITSINIDGHLLLIGSHEKEKGQSPDQFKIVIPKIPAYFTGTGDLMTALLLGWSNKHPDDLAKAAELAVSSLQAVLQRTLDDY KTAGYDPQSSSLEIRLIQSQDDIRHPQIKFKAENYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Potri.017G129000 [exp]	0	1
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Potri.008G046100 [exp]	10.09	0.7114
AT3G15460			Ribosomal RNA processing Brix ...		Potri.001G403100 [exp]	13.60	0.6816
AT2G20390			unknown protein		Potri.002G256700 [exp]	15.09	0.6427
AT1G03330			Small nuclear ribonucleoprotei...		Potri.004G219000 [exp]	17.14	0.6886
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.019G066200 [exp]	17.23	0.6295
AT1G09794			Cox19 family protein (CHCH mot...		Potri.003G009800 [exp]	19.28	0.6831
AT1G70180			Sterile alpha motif (SAM) doma...		Potri.008G193300 [exp]	29.83	0.6671
AT5G12240			unknown protein		Potri.001G274400 [exp]	35.41	0.6142
AT5G10780			unknown protein		Potri.018G016800 [exp]	50.19	0.5805
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.016G091200 [exp]	58.17	0.6205

Compare expression of checked genes

Potri.017G129000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.