Plant FIBer expression Database

Potri.017G129100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G66330 476 / 1e-166 senescence-associated family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004049
[exp]
553 / 0 AT1G66330 423 / 2e-146 senescence-associated family protein (.1.2)
Lus10002290
[exp]
457 / 1e-159 AT1G66330 384 / 7e-132 senescence-associated family protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.017G129100.11 pacid=42813160 polypeptide=Potri.017G129100.11.p locus=Potri.017G129100 ID=Potri.017G129100.11.v4.1 annot-version=v4.1
ATGGCACTTAATGCAAGCAAGGTTTCGAGCAGCCCTTTTGTGACTCAAAGGAAACTTACCTCTACATCTCATGGAATCATATGTTCCTTTTCCAAGTCAT
TCCAAAAAAATAAACTACACCCTACTCATCAAGGAATTGAGCTTCAACAACTGAGCAGTAAGCATCTCTTGACAGCAAAATTGGCCTTCTCTGGTGAGAG
TTTGCAGGGCATACATGGAAAACCAGTTAGTCTCATCATCTCTCGCAGATCTTCCACATTATGCCAGTCAACAAGAACTCATAGAACTGAAGAAAAAGAA
TGTACTAGACCATACAGTGACAGTTCTGATTCATCCAGGGCACAAGTTGGAGAAAAGGAAGATGAGCATCAACTCATGTCTGGGAGAACTATTCACTCAT
GTCATGCTTTAGCTGAAGCATGTAGATTTGTATATAATGATGCCAAGTTTGTAAATGAAAGGGCTCGCAACGACATTATTTTACTTTCACGTGGGATATC
AAGGCTGGATGCTCGTGCACGTAAAGGTGTTGCGATTCTTGGGTCTGGGTTTCTTAAACTCGATGCTCGAGCAAGAGAGGACACTGAGAAAATTGACCGT
GATGTGAAGGAAAAAGCTGAGCGTCTTCATCACATTGCTACTATCATAAAGGACAGAGCTCAAACCAAATTGAAAACTGCTGCTGACAAGCATTGGAGTG
ATGGAGCCTTGGAGGCTGATTTGCGCCTTGCTGACTTCCGCGCCAAGCAACGTGCAATGGAAGATGCTCTAATGGCGTTGGAGTTTGTCAAAAATATCCA
TGAATTGATGGTGAGCAAGATGTACAAATTCCCGCTGCGTAAGGAGGAAGGTTCACTAACTGCTAATGGCATACTGGGAAATATAATGCTTGAGAAAAAT
GGTAGGACACTGGACTTCTTCCCTGGAGAAGTATCAACAGATCGCATTACTGCTATTCAGGAAGCTTACTGGAGTATGGCATCTGCGCTCTCTGAAGCTG
ATGGAATTGACTATACAGATCCTGAAGAGCTCGAGTTGTTGGTTACAACTCTTATAGATCTTGATGCAATGGATGGTAAGGGCAGTGTATCGTTATTGGC
AGAATGTTCAAATTCTCCAGATGTCAACACAAGACAAGCACTGGCCAATGCGTTGGCAGCAGCCCCATCCATGTGGACTCTTGGAAATGCAGGCATGGGA
GCCTTACAGAGACTGGCAGAAGATAAAAACCCAGCCATTGCCAATGCAGCATCCAAAACTATCCATGAGCTGAAGAAACAGTGGGAAATACAGGAAGGAG
ATAGTTGGAGGTTTATGATGAATCAAAAACCAGTTGAAGAAGTAGATAGCCAAGAAGACAATAACGACGCAGATACAGGTTGA
AA sequence
>Potri.017G129100.11 pacid=42813160 polypeptide=Potri.017G129100.11.p locus=Potri.017G129100 ID=Potri.017G129100.11.v4.1 annot-version=v4.1
MALNASKVSSSPFVTQRKLTSTSHGIICSFSKSFQKNKLHPTHQGIELQQLSSKHLLTAKLAFSGESLQGIHGKPVSLIISRRSSTLCQSTRTHRTEEKE
CTRPYSDSSDSSRAQVGEKEDEHQLMSGRTIHSCHALAEACRFVYNDAKFVNERARNDIILLSRGISRLDARARKGVAILGSGFLKLDARAREDTEKIDR
DVKEKAERLHHIATIIKDRAQTKLKTAADKHWSDGALEADLRLADFRAKQRAMEDALMALEFVKNIHELMVSKMYKFPLRKEEGSLTANGILGNIMLEKN
GRTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIDLDAMDGKGSVSLLAECSNSPDVNTRQALANALAAAPSMWTLGNAGMG
ALQRLAEDKNPAIANAASKTIHELKKQWEIQEGDSWRFMMNQKPVEEVDSQEDNNDADTG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G66330 senescence-associated family p... Potri.017G129100
[exp]
0 1
AT2G42280 bHLH bHLH130 basic helix-loop-helix (bHLH) ... Potri.003G207200
[exp]
1.41 0.8263
AT4G38960 CO B-box type zinc finger family ... Potri.007G015200
[exp]
2.44 0.7985
AT4G12320 CYP706A6 "cytochrome P450, family 706, ... Potri.001G118500
[exp]
4.00 0.7283
AT1G22180 Sec14p-like phosphatidylinosit... Potri.013G068700
[exp]
6.00 0.7917
AT3G47500 DOF CDF3, AtDof3,3 cycling DOF factor 3 (.1) Potri.004G121800
[exp]
13.26 0.7748
AT4G24150 GRF ATGRF8 growth-regulating factor 8 (.1... Potri.001G082700
[exp]
13.49 0.7372
AT5G01260 Carbohydrate-binding-like fold... Potri.016G114500
[exp]
20.12 0.6889
AT2G32950 FUS1, EMB168, D... FUSCA 1, EMBRYO DEFECTIVE 168,... Potri.014G159300
[exp]
25.23 0.7587 COP1.1
AT5G47650 ATNUDX2, ATNUDT... ARABIDOPSIS THALIANA NUDIX HYD... Potri.001G368000
[exp]
25.78 0.7217
AT3G47500 DOF CDF3, AtDof3,3 cycling DOF factor 3 (.1) Potri.010G167600
[exp]
32.48 0.7717

Potri.017G129100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.