Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HMGA901
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14900 103 / 2e-27 HMGA high mobility group A (.1) AT3G18035 71 / 2e-14 HON4 winged-helix DNA-binding transcription factor family protein (.1) AT1G48620 70 / 4e-14 HON5 high mobility group A5 (.1) AT5G08780 62 / 3e-11 winged-helix DNA-binding transcription factor family protein (.1) AT2G30620 47 / 2e-06 winged-helix DNA-binding transcription factor family protein (.1.2) AT1G49950 44 / 2e-05 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G087500 [exp] 192 / 1e-62 AT1G14900 91 / 1e-22 high mobility group A (.1) Potri.008G132400 [exp] 100 / 3e-26 AT1G14900 107 / 4e-29 high mobility group A (.1) Potri.010G109600 [exp] 98 / 2e-25 AT1G14900 98 / 3e-25 high mobility group A (.1) Potri.015G040200 [exp] 76 / 2e-16 AT1G48620 99 / 6e-22 high mobility group A5 (.1) Potri.012G048500 [exp] 71 / 2e-14 AT1G14900 66 / 5e-12 high mobility group A (.1) Potri.002G199900 [exp] 55 / 2e-09 AT2G30620 84 / 4e-20 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.005G116600 [exp] 45 / 8e-06 AT2G18050 117 / 3e-33 histone H1-3 (.1.2) Potri.008G162300 [exp] 43 / 2e-05 AT2G30620 76 / 2e-17 winged-helix DNA-binding transcription factor family protein (.1.2) Potri.002G043100 [exp] 43 / 5e-05 AT2G30620 92 / 3e-22 winged-helix DNA-binding transcription factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004056 [exp] 86 / 8e-21 AT1G14900 104 / 5e-28 high mobility group A (.1) Lus10002284 [exp] 82 / 8e-20 AT1G14900 108 / 6e-30 high mobility group A (.1) Lus10032231 [exp] 70 / 6e-14 AT1G48620 103 / 2e-23 high mobility group A5 (.1) Lus10024594 [exp] 69 / 1e-13 AT3G18035 132 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1) Lus10004328 [exp] 56 / 2e-09 AT3G18035 129 / 2e-32 winged-helix DNA-binding transcription factor family protein (.1) Lus10028911 [exp] 54 / 1e-08 AT1G48620 128 / 4e-32 high mobility group A5 (.1) Lus10022001 [exp] 53 / 2e-08 AT2G30620 115 / 3e-31 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10042541 [exp] 52 / 3e-08 AT2G30620 121 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10005534 [exp] 49 / 6e-07 AT2G30620 116 / 9e-32 winged-helix DNA-binding transcription factor family protein (.1.2) Lus10006562 [exp] 48 / 6e-07 AT2G30620 112 / 2e-31 winged-helix DNA-binding transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00538 [poplar] [flax] Linker_histone linker histone H1 and H5 family CL0123 [poplar] [flax] PF02178 [poplar] [flax] AT_hook AT hook motif
Representative CDS sequence Show only first row Show all	>Potri.017G129400.1 pacid=42813530 polypeptide=Potri.017G129400.1.p locus=Potri.017G129400 ID=Potri.017G129400.1.v4.1 annot-version=v4.1 ATGGCAGCTGAGGAGATTAATAAGCCCCCATCACTCCCTCCTTACCCTGAGATGATTTTGTCAGCCATTGAAGCATTGAATGAGGCCAATGGCTGTAACA AGACGTCAATATCGAAATACATCGAATCAAAATATGGGGACTTGCCAGCTGGCCACACTGCACTCCTCTCACACCACCTCAATCGAATGAAGGATACCGG AGAGTTAGTATTTTGGAAAAACAACTACATGAAGCCAGATCCCAATGCTCCTCCTAGGCGTGGTCGTGGTAGGCCCCCTAAGCCGAAAGACCCATTGTCA CCGGGCTCAGACCTGCCCCCTGCCAGACCGAGGGGTCGTCCACCAAAGGATCCCAATGCACCCCCAAAGCCAGTGAAGCCAAAGGCTGCGACTGGAAGAA GTGGAAAGCCAAGAGGGAGGCCACGCAAGATGGCACGACCTACAGGAGGAATAACCACTGGAACTGCTACCACAACCTCAGCAGTTCCAATGACGGCAGG TAGTGGAAGGCCAAGGGGTCGGCCTCCAAAGGTGAAGGCCGCAACTATGCCTGAAGTGAGTGTTCAGAATTAA
AA sequence Show only first row Show all	>Potri.017G129400.1 pacid=42813530 polypeptide=Potri.017G129400.1.p locus=Potri.017G129400 ID=Potri.017G129400.1.v4.1 annot-version=v4.1 MAAEEINKPPSLPPYPEMILSAIEALNEANGCNKTSISKYIESKYGDLPAGHTALLSHHLNRMKDTGELVFWKNNYMKPDPNAPPRRGRGRPPKPKDPLS PGSDLPPARPRGRPPKDPNAPPKPVKPKAATGRSGKPRGRPRKMARPTGGITTGTATTTSAVPMTAGSGRPRGRPPKVKAATMPEVSVQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14900		HMGA	high mobility group A (.1)		Potri.017G129400 [exp]	0	1	HMGA901
AT3G47160			RING/U-box superfamily protein...		Potri.001G250800 [exp]	1.00	0.8393
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.014G165500 [exp]	7.21	0.7984
AT4G36850			PQ-loop repeat family protein ...		Potri.007G031800 [exp]	20.83	0.7218
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Potri.014G075800 [exp]	22.51	0.7178
AT2G38450			unknown protein		Potri.016G128700 [exp]	26.83	0.7691
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.007G122800 [exp]	29.29	0.7635
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Potri.002G028200 [exp]	29.74	0.7831	Pt-COL6.2
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Potri.005G052400 [exp]	30.00	0.7491
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.011G071700 [exp]	30.06	0.7602	HSFA4.1
AT5G23160			unknown protein		Potri.013G149300 [exp]	36.12	0.7664

Compare expression of checked genes

Potri.017G129400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.