Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23890 246 / 4e-78 NHL domain-containing protein (.1.2) AT3G14860 127 / 3e-32 NHL domain-containing protein (.1.2) AT1G23880 116 / 3e-28 NHL domain-containing protein (.1) AT1G70280 111 / 6e-27 NHL domain-containing protein (.1.2) AT5G14890 113 / 7e-27 NHL domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G087300 [exp] 562 / 0 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.011G107800 [exp] 138 / 3e-36 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.001G387500 [exp] 132 / 7e-34 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.010G094200 [exp] 117 / 8e-29 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.008G147700 [exp] 116 / 2e-28 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.016G092200 [exp] 115 / 6e-28 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030849 [exp] 253 / 1e-80 AT1G23890 271 / 7e-88 NHL domain-containing protein (.1.2) Lus10030639 [exp] 204 / 3e-62 AT1G23890 191 / 2e-57 NHL domain-containing protein (.1.2) Lus10029176 [exp] 121 / 5e-30 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10012989 [exp] 118 / 5e-29 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10032158 [exp] 115 / 2e-28 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10014529 [exp] 114 / 1e-27 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10039421 [exp] 108 / 1e-26 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1) Lus10039484 [exp] 108 / 2e-25 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10030850 [exp] 103 / 1e-23 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10030637 [exp] 53 / 3e-07 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G129500.1 pacid=42814110 polypeptide=Potri.017G129500.1.p locus=Potri.017G129500 ID=Potri.017G129500.1.v4.1 annot-version=v4.1 ATGGCTTCTCAATTCTTTCTGCTCATCTTCTTCCTCTTCAAGCTAGCTTCAATTCATGGGGAGCAGATCATGTTAGAAGATGGGTACATGGTAACTACAG TGATGGATGGCCACAAATTAAATGTAAACCCACACGCAGTTCAACTCAGATCATCTGATCTTGTAGTCCTTGATTCTTCTAAGAGTGTTTTTTACACTCT ACCATTTCCCATTTCTCAGGATGGTGTAATGGTAAAACGGTTATCTGGAAGTTGGGATAAAGGGTACATAGATGGAGAACCAGGCTTGGCTCGGTTCAAT AAACCAAAGAGTTTCACAGTTGATCTTAGAGGGAATGTTTATGTAGCTGATCAACTAAACCATGCTGTGAGAAAGATAAGCAGCTCAGGCATGACCACCA CCATTGCTGGTAATTACTCCCAGATAGGTCGGCAGGATGGTCCAGGGAAAACTGCAACATTCTCCACTGATTTTGAGGTGCTTTTTGTTCCTCAAATATG CGCTTTACTAATTTCAGATCATGGCAATCAACTGCTTCGCCAGGTTGACCTTAAGCAAGAGGATTGTATAATAGGTTCTCAATCTGCGCTTGGAGCAGTT AAATTTTGGGTCCTTGGACTGGTGCTTTCATGTTTGTTTGGCTTAGCCACGGGGTTTGCAATTCGCCCTTATGTTATCCCCCATGAAGGCGTCAGACCCC TTCATTTCAGCAAGACATGGAAGCATTGCCTAATCAATCTGGCGAGTCTAATACCGAGGAGTTGCTTCGACGTCAGAAACGCAATTGCTAGTAGTAGGCT TTACGTGCTTTCAGAGAAGCTCTTATGCCTGAGCCTGTCTCATCTTTCACTCATGTTTAGGATCAACACTGTAGGTTCTAAGGTTTTAAACAAGGATTTG TTATCCTTGATGGATTCTGATGTAAGTAGTCATAAGGTAGGGAAGTCGCAGGTGTATGCTGATCAGTTGAAGGATTTGATAGACTTTAATGTTCAATCAC AATCATCAAGCTCGATGAGCAACATCTTGAAGCTAGGAGAAGGGGGTCAAGAGAGATGTGATGCTTCATTGGATGGCTACGGAAGGATAAATGATATGAT CCAGGCTAACGTCATGGGATTTGGTGAGCTGGCCAAAGAAACAACTCCAGCTGATGTGCCTTTGGTAGGGAGTTTGGGTTTAGTTAAAAGGAGATGA
AA sequence Show only first row Show all	>Potri.017G129500.1 pacid=42814110 polypeptide=Potri.017G129500.1.p locus=Potri.017G129500 ID=Potri.017G129500.1.v4.1 annot-version=v4.1 MASQFFLLIFFLFKLASIHGEQIMLEDGYMVTTVMDGHKLNVNPHAVQLRSSDLVVLDSSKSVFYTLPFPISQDGVMVKRLSGSWDKGYIDGEPGLARFN KPKSFTVDLRGNVYVADQLNHAVRKISSSGMTTTIAGNYSQIGRQDGPGKTATFSTDFEVLFVPQICALLISDHGNQLLRQVDLKQEDCIIGSQSALGAV KFWVLGLVLSCLFGLATGFAIRPYVIPHEGVRPLHFSKTWKHCLINLASLIPRSCFDVRNAIASSRLYVLSEKLLCLSLSHLSLMFRINTVGSKVLNKDL LSLMDSDVSSHKVGKSQVYADQLKDLIDFNVQSQSSSSMSNILKLGEGGQERCDASLDGYGRINDMIQANVMGFGELAKETTPADVPLVGSLGLVKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23890			NHL domain-containing protein ...		Potri.017G129500 [exp]	0	1
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.002G029100 [exp]	1.73	0.8433
AT2G38430			unknown protein		Potri.019G030200 [exp]	5.00	0.8141
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Potri.012G131500 [exp]	6.00	0.7890
AT5G59350			unknown protein		Potri.010G206100 [exp]	7.61	0.8255
AT5G28830			calcium-binding EF hand family...		Potri.005G052900 [exp]	7.87	0.7722
AT5G15080			Protein kinase superfamily pro...		Potri.006G066100 [exp]	8.48	0.8155
AT2G38430			unknown protein		Potri.019G029900 [exp]	9.16	0.8119
AT1G13380			Protein of unknown function (D...		Potri.008G120900 [exp]	10.09	0.8129
AT3G48880			RNI-like superfamily protein (...		Potri.016G019500 [exp]	11.83	0.7750
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.010G101100 [exp]	12.00	0.8112

Compare expression of checked genes

Potri.017G129500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.