Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01918 101 / 5e-27 PQL3 PsbQ-like 3 (.1) AT4G05180 66 / 2e-13 PSII-Q, PSBQ, PSBQ-2 photosystem II subunit Q-2 (.1) AT4G21280 62 / 7e-12 PSBQ, PSBQA, PSBQ-1 PHOTOSYSTEM II SUBUNIT Q-1, photosystem II subunit QA (.1.2) AT3G01440 47 / 2e-06 PnsL3, PQL2, PQL1 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004054 [exp] 116 / 4e-33 AT2G01918 89 / 6e-23 PsbQ-like 3 (.1) Lus10002286 [exp] 114 / 1e-32 AT2G01918 90 / 2e-23 PsbQ-like 3 (.1) Lus10020071 [exp] 59 / 1e-10 AT4G05180 282 / 2e-97 photosystem II subunit Q-2 (.1) Lus10018385 [exp] 57 / 4e-10 AT4G05180 275 / 3e-94 photosystem II subunit Q-2 (.1) Lus10007627 [exp] 56 / 1e-09 AT4G05180 281 / 7e-97 photosystem II subunit Q-2 (.1) Lus10006751 [exp] 53 / 3e-08 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1) Lus10036622 [exp] 46 / 5e-06 AT3G01440 237 / 2e-79 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Lus10035839 [exp] 45 / 7e-06 AT3G01440 232 / 2e-77 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05757 [poplar] [flax] PsbQ Oxygen evolving enhancer protein 3 (PsbQ)
Representative CDS sequence Show only first row Show all	>Potri.017G129700.1 pacid=42813302 polypeptide=Potri.017G129700.1.p locus=Potri.017G129700 ID=Potri.017G129700.1.v4.1 annot-version=v4.1 ATGTTGAAAGGATCAAGGATGGCATTAAGATCATTAGTCTCAGTACAAAATGTAACCCACAATCCCCCAATATTCACTTGGTGCCTAAAACCTACCTTTC AGTCCAAGGGTCATATGCCCCACAAGGTCCTGAGGTCTAATATAAGTAGAAGAATAGGAGCAATAGCAGCAGTGGCAACAATTGTATTGGTAAAGGAAGC AATGTTTAGTCAAGATATTGCAAATGGACTAGAATTCAAGTTTGCAACTCCTGATCGAAGATCAGTTGAAGAAGCTGAGAGCGGAGTCAGAGACTACGAA CAATCTTTGTTGCAACTGAAAGATCTGTTAGGGTCACAATCTTGGAAAGAAGCACAGAAAGTGCTTAGAAGGCGCTCTTCAAACTTGAAGCTGGATCTTT ATGCTGTAATTGAAAGCAAACCTGGAAAGGACAGGACTCAACTGAGGACCCTATATGCCAATCTCTTCAACAATGTAACCAAACTAGACTATGCAGTAAG AGAGAAAGATGTTTCACTTGTGTGGCAATGCTACGAAAATATTGTTGCGTCCTATGATCATATCTTGTCTAGGATATGA
AA sequence Show only first row Show all	>Potri.017G129700.1 pacid=42813302 polypeptide=Potri.017G129700.1.p locus=Potri.017G129700 ID=Potri.017G129700.1.v4.1 annot-version=v4.1 MLKGSRMALRSLVSVQNVTHNPPIFTWCLKPTFQSKGHMPHKVLRSNISRRIGAIAAVATIVLVKEAMFSQDIANGLEFKFATPDRRSVEEAESGVRDYE QSLLQLKDLLGSQSWKEAQKVLRRRSSNLKLDLYAVIESKPGKDRTQLRTLYANLFNNVTKLDYAVREKDVSLVWQCYENIVASYDHILSRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01918		PQL3	PsbQ-like 3 (.1)		Potri.017G129700 [exp]	0	1
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Potri.012G106600 [exp]	2.23	0.9747
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.009G067300 [exp]	6.00	0.9728
AT4G10340		LHCB5	light harvesting complex of ph...		Potri.019G063101 [exp]	6.92	0.9738
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Potri.007G072500 [exp]	7.07	0.9471
AT4G21780			unknown protein		Potri.011G136500 [exp]	8.36	0.9715
AT2G39730		RCA	rubisco activase (.1.2.3)		Potri.010G200500 [exp]	8.94	0.9516
AT3G25920		RPL15	ribosomal protein L15 (.1)		Potri.008G121100 [exp]	10.90	0.9628
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G222300 [exp]	11.74	0.9634
AT2G45290			Transketolase (.1)		Potri.002G146300 [exp]	13.78	0.9584
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Potri.002G016000 [exp]	14.69	0.9622	PETE.2

Compare expression of checked genes

Potri.017G129700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.