Plant FIBer expression Database

Potri.017G129800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16620 357 / 6e-120 PDE120, TIC40, ATTIC40 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G087100
[exp]
588 / 0 AT5G16620 398 / 3e-136 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002287
[exp]
359 / 9e-121 AT5G16620 330 / 2e-109 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
Lus10004053
[exp]
291 / 6e-94 AT5G16620 257 / 9e-81 pigment defective embryo 120, translocon at the inner envelope membrane of chloroplasts 40, hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence
>Potri.017G129800.1 pacid=42813091 polypeptide=Potri.017G129800.1.p locus=Potri.017G129800 ID=Potri.017G129800.1.v4.1 annot-version=v4.1
ATGGAAAACCCTAGATTGTCTCTACTCTCTTCTTCTTCACCTAAATTAGTTATGGGATACCCAACTTCACTCAAAAACCCTACCACCCCTAAATTCTCCA
TATCCACAACCAGACCCTCACTTCCGTTCCCTCACAGAACTTCCAAAACTGTCACTCATACTTCAAGAATTTCCATTTCTGCCCTTTCCCAATCTCATGG
TCCCCGTAGAACCTCAAAAAATGGGAGTGAATATTTTGCTAGCATTTCGTCATCAAGTGGACAACAGACGGCTTCTGTTGGAGTTAATCCACAGTCAGTG
TCGCCACCGCCTTCACAAATAGGATCGCCACTGTTTTGGGTTGGAGTTGGTGTTGCGTTGTCAGCAATTTTTTCATGGGTGGCTACACGGTTAAAGAATT
ATGCCATGCAACAAGCTTTCAAATCTTTGACAGAGCAGATGAATGCACAAAATAACCAATTCAATCCCGCATTTTCTGCAAGGTCACCTTTTCCATTTTC
TCCACCACCAGCATCACAGCCTGCAACCTCACCTTTTCAAACTGCTTCTCAACCTGCAGTCACAGTAGATATTCCTGCCACAAAAGTAGAAGCAGCTCCA
GAAACTGATGCTAGGAAGGAAAAGGAAACTGATACTCTAGAGGAAAGAGAGATAAAGGAGGAGCCAAGGAAATTCGCTTTTGTGGATGTTTCTCCTGAAG
AAACCTCGCTGAACACTCCTTTTTCAAGTGTTGAAGATGTCATCGATACAAGCTCATCCAAGGATGTTCAGTTTGCGAAGGAAGCCTCTCAAAATGGAGC
TGCTTTTAAGCAGGGCCCAAGTGCTTCCGAGCCTTCCGAGGGTTCTCAATCTAGTCAAAAGGCAGGATCTTTATCCGTGGAAGCTTTGGAGAAAATGATG
GACGATCCAACAGTGCAAAAGATGGTTTATCCGTATTTACCCGAGGAAATGAGGAACCCTACCACCTTCAAATGGATGCTGCAAAATCCACAATACCGAC
AACAATTGGAAGAAATGCTAAATAATATGAGTGGAAGCAGTGAATGGGACAGCCGGATGGTGGATTCTTTAAAAAATTTTGATCTCAGCAGTCCTGAGGT
TAAGCAGCAATTTGATCAGATTGGCCTTACACCTGAAGAAGTCATCTCAAAAATCATGGCCAATCCTGATGTTGCCCTGGCATTTCAAAATCCTAGAGTT
CAACAAGCCATTATGGAGTGTTCACAGAACCCACTAAGCATTGCCAAATATCAGAATGACAAGGAGGTTATGGATGTCTTCAACAAAATATCAGAAATAT
TGGGATGA
AA sequence
>Potri.017G129800.1 pacid=42813091 polypeptide=Potri.017G129800.1.p locus=Potri.017G129800 ID=Potri.017G129800.1.v4.1 annot-version=v4.1
MENPRLSLLSSSSPKLVMGYPTSLKNPTTPKFSISTTRPSLPFPHRTSKTVTHTSRISISALSQSHGPRRTSKNGSEYFASISSSSGQQTASVGVNPQSV
SPPPSQIGSPLFWVGVGVALSAIFSWVATRLKNYAMQQAFKSLTEQMNAQNNQFNPAFSARSPFPFSPPPASQPATSPFQTASQPAVTVDIPATKVEAAP
ETDARKEKETDTLEEREIKEEPRKFAFVDVSPEETSLNTPFSSVEDVIDTSSSKDVQFAKEASQNGAAFKQGPSASEPSEGSQSSQKAGSLSVEALEKMM
DDPTVQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLEEMLNNMSGSSEWDSRMVDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPDVALAFQNPRV
QQAIMECSQNPLSIAKYQNDKEVMDVFNKISEILG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G16620 PDE120, TIC40, ... pigment defective embryo 120, ... Potri.017G129800
[exp]
0 1
Potri.017G120301
[exp]
1.41 0.9543
AT2G15690 Tetratricopeptide repeat (TPR)... Potri.003G058300
[exp]
4.47 0.9465
AT4G16570 ATPRMT7 ARABIDOPSIS THALIANA PROTEIN A... Potri.003G076500
[exp]
5.65 0.9266
AT1G31220 Formyl transferase (.1) Potri.012G107500
[exp]
5.74 0.9312
AT2G04030 Hsp88.1, AtHsp9... HEAT SHOCK PROTEIN 88.1, EMBRY... Potri.008G112700
[exp]
9.16 0.9488
AT3G48500 PDE312, PTAC10 PLASTID TRANSCRIPTIONALLY ACTI... Potri.015G091700
[exp]
9.16 0.9494
AT3G46740 MAR1, TOC75-III... MODIFIER OF ARG1 1, translocon... Potri.001G072800
[exp]
10.48 0.9217 Pt-TOC75.2
AT4G20010 PTAC9, OSB2 ORGANELLAR SINGLE-STRANDED DNA... Potri.001G394200
[exp]
11.40 0.9320
AT3G06200 P-loop containing nucleoside t... Potri.010G029400
[exp]
11.53 0.9388
AT1G62680 Pentatricopeptide repeat (PPR)... Potri.016G136700
[exp]
13.63 0.9417

Potri.017G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.