Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37710 610 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G49050 494 / 7e-173 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 461 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G42450 69 / 3e-12 alpha/beta-Hydrolases superfamily protein (.1) AT4G16070 58 / 8e-09 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT3G14075 57 / 1e-08 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086900 [exp] 808 / 0 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G142700 [exp] 505 / 1e-177 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 495 / 8e-174 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 482 / 1e-168 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G159200 [exp] 479 / 1e-167 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G222000 [exp] 68 / 4e-12 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G067900 [exp] 62 / 4e-10 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 58 / 1e-08 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 57 / 2e-08 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039240 [exp] 469 / 4e-164 AT3G49050 624 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10027485 [exp] 464 / 1e-161 AT3G49050 616 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 452 / 9e-157 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10010983 [exp] 403 / 7e-140 AT5G37710 384 / 3e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10000445 [exp] 400 / 6e-139 AT5G37710 385 / 1e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10030391 [exp] 401 / 2e-137 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000444 [exp] 210 / 1e-66 AT5G37710 191 / 5e-60 alpha/beta-Hydrolases superfamily protein (.1) Lus10024878 [exp] 68 / 6e-12 AT2G42450 618 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10015680 [exp] 67 / 2e-11 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10000708 [exp] 66 / 5e-11 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3) CL0028 [poplar] [flax] AB_hydrolase PF03893 [poplar] [flax] Lipase3_N Lipase 3 N-terminal region
Representative CDS sequence Show only first row Show all	>Potri.017G130000.1 pacid=42813799 polypeptide=Potri.017G130000.1.p locus=Potri.017G130000 ID=Potri.017G130000.1.v4.1 annot-version=v4.1 ATGTCTCTCTGTTGTGGAGTAGAATGTGTAGTTATATTAGGCTTTGCGCGCTGGGTTTGGAAACGTTGCACATACATTAGTGGTAATGACAGTGCAAACT GGACATTAGCATCACCAGAAGAGTTTGAACCAATCCCTCGTATGTGCCGTTTAGTCCTTGCTGTCTACGAACCAGACCTTCACAACCCTCAATTCATTCC TCAACATGGTTTCCGAATAAACCCTGATTGGGTTATCAAACGTGTAACTTATGAACAAACACAAGGGCGGGCCCCTCCTTACGTAATTTACACAGACCAT GAAAATAAAGAGATTGTTTTGGCGGTTAGGGGATTGAATTTATACAAAGAAAGTGATTATAAAACGTTGTTAGATAATAGATTAGGAATGCAGATGTTTG ATGGAGGTTTTGTGCATCATGGGTTGATGAAGTCTGCTGTTTGGTTATTGAATGAAGAAGGGGAGACATTGAAGAGGTTGTGGGAGGAGAGTGGGAAAGA GTATGATATGGTTTTCGCTGGGCATTCTTTAGGGTCTGGTGTAGTGGCTTTGTTAACTGTTATAGCGGTTAATCATAGAGATAAGTTAGGTGGGATTCCG AGAGAGAAGATTAGGTGTTATGCTATGGCTCCGGCAAGGTGCATGTCTCTTAATTTGGCTGTTAAGTATGCTGATGTTATTCACTCTGTTATCTTGCAGG ATGATTTCTTACCAAGAACAGCTACTCCATTGGAAGACATCTTTAAGTCAATCTTCTGCTTGCCCTGCTTGTTGCTTTTGGTTTGTTTGAGAGATACCTT CATTCCAGAAGGTAGAAAGCTTAGAGATTCAAGAAGATTTTATGCCCCTGGACGAATGTATCATATTGTAGAGAGAAGATTTTGCAGATGTGGGAGGTTT CCTCCAGAGGTCAGAACTGCCATTCCTGTAGATGGAAGGTTTGAACACATTGTCTTATCATGTAATGCCACATCTGATCATGGAATTATTTGGATAGAAA GGGAATCAGAGAAAGCCTTGCAGATAATGAAGGAAATTGATTCTGGAACCATTACAACTCCTCCAAAAGTACAGAAATTGGAAAGGATGCAGACAGTGGA GCAAGAACACAGGGATGCATTGGAAAGAGCTGTCAGTTTAAATATTCCTCATGCTGTGACCACCCCAGATGTAGAACTCTTGAAGGATAACAGGACAGAG CCTTCCCTGTCCGAAGGCGTCCAAGCCTCACAATTCAAATCGACGTCCACTGGCAGAAAGACTAACTGGGATGAAGTGGTTAAAAATCTTTTCAAGAAGG GCGAGTCAGGACACCTTGTTTTAAACAAAGAAGTATCTGCTCCAACTCACAACATTTCTGTTGGCCAACCTTCATGA
AA sequence Show only first row Show all	>Potri.017G130000.1 pacid=42813799 polypeptide=Potri.017G130000.1.p locus=Potri.017G130000 ID=Potri.017G130000.1.v4.1 annot-version=v4.1 MSLCCGVECVVILGFARWVWKRCTYISGNDSANWTLASPEEFEPIPRMCRLVLAVYEPDLHNPQFIPQHGFRINPDWVIKRVTYEQTQGRAPPYVIYTDH ENKEIVLAVRGLNLYKESDYKTLLDNRLGMQMFDGGFVHHGLMKSAVWLLNEEGETLKRLWEESGKEYDMVFAGHSLGSGVVALLTVIAVNHRDKLGGIP REKIRCYAMAPARCMSLNLAVKYADVIHSVILQDDFLPRTATPLEDIFKSIFCLPCLLLLVCLRDTFIPEGRKLRDSRRFYAPGRMYHIVERRFCRCGRF PPEVRTAIPVDGRFEHIVLSCNATSDHGIIWIERESEKALQIMKEIDSGTITTPPKVQKLERMQTVEQEHRDALERAVSLNIPHAVTTPDVELLKDNRTE PSLSEGVQASQFKSTSTGRKTNWDEVVKNLFKKGESGHLVLNKEVSAPTHNISVGQPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37710			alpha/beta-Hydrolases superfam...		Potri.017G130000 [exp]	0	1
AT2G40316			unknown protein		Potri.008G073200 [exp]	3.46	0.8458
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Potri.014G034700 [exp]	5.74	0.8071
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.006G264101 [exp]	15.49	0.7935
AT1G54460			TPX2 (targeting protein for Xk...		Potri.005G055900 [exp]	17.08	0.6744
AT3G19720		DRP5B, ARC5	Dynamin related protein 5B, AC...		Potri.018G027001 [exp]	20.59	0.8033
AT3G28610			P-loop containing nucleoside t...		Potri.012G072300 [exp]	21.90	0.7756
AT1G49960			Xanthine/uracil permease famil...		Potri.001G292600 [exp]	30.39	0.7868
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.014G015600 [exp]	35.24	0.7847
AT1G69400			Transducin/WD40 repeat-like su...		Potri.010G162700 [exp]	35.94	0.7308
AT4G21510			F-box family protein (.1)		Potri.011G042800 [exp]	38.67	0.7045

Compare expression of checked genes

Potri.017G130000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.