Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37690 525 / 0 SGNH hydrolase-type esterase superfamily protein (.1) AT1G74460 307 / 7e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 253 / 1e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 250 / 2e-80 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT1G71691 250 / 2e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G15720 249 / 2e-80 GLIP7 GDSL-motif lipase 7 (.1) AT4G28780 249 / 5e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 248 / 8e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 247 / 3e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 246 / 5e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086700 [exp] 599 / 0 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G068700 [exp] 322 / 1e-108 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024700 [exp] 260 / 2e-84 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 258 / 4e-83 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G064500 [exp] 250 / 2e-80 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 250 / 2e-80 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 249 / 4e-80 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 249 / 7e-80 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.002G253400 [exp] 248 / 1e-79 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039877 [exp] 550 / 0 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10018641 [exp] 540 / 0 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10001643 [exp] 318 / 7e-107 AT1G74460 530 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034459 [exp] 313 / 5e-105 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019095 [exp] 312 / 7e-105 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021664 [exp] 310 / 8e-104 AT1G74460 526 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 263 / 2e-85 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10005238 [exp] 259 / 7e-84 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 256 / 2e-82 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 256 / 2e-82 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.017G130100.1 pacid=42813088 polypeptide=Potri.017G130100.1.p locus=Potri.017G130100 ID=Potri.017G130100.1.v4.1 annot-version=v4.1 ATGGCAATACTAGGACTGGCTTTGGCTGCTTTCATTCTTGCAGCAAAGGCAACAACATTGGCATCAGCTGCTTCACTTGTCACATTTATTTTTGGTGACT CATTGACAGAAGTTGGAAACAACAAGTATCTTCAATATTCTCTTGCAAGGTCTGATTATCCGTGGTATGGGATCGATTTTCCTGGTGGAAGGGCAACAGG AAGGTTCACAAATGGGAGGACTATTGGTGATATAATTTCTGCAAAACTTGGAATTCCCTCACCACCACCTTTCCTTTCTTTGTCAAAGAATGATGATGCA TTACTTACGGGGGTTAATTATGCATCTGGTGGAGCAGGAATTCTTAATGACACAGGATTATATTTTATTCAGAAATTATCCTTTTACGATCAGATAGAGT GCTTTAAGAAGACTAAGGAATCAATCAGGGCTAAAATAGGAGAAGATGCTGCCAACAAACTTTGCAATGAGGCCATGTACTTCATTGGACTTGGCAGTAA TGACTATGTCAACAATTATTTGCAGCCCTTTTTAGCAGATGGTCAGCAGTACACACCTGATGAGTTTGTGGAACTCCTGATATCTACACTGGACAAACAG CTTTCTATGCTATACCAACTGGGTGCCAGAAAGGTTGTCTTTCATGGGCTTGGCCCTCTTGGCTGCATTCCTTCTCAGAGGGTGAAATCAAAGACAGGTC GATGCTTAAAGAGAGTAAATGAGTATGTGTTAGAATTCAACTCCAGAGTTAAGAAGCTGATCGCCACTCTAAACCGACGATTCCCAAATGCAAAACTAAC ATTTGCAGATGCGTACGGAGATGTTTTGGACTTGATTGATAATCCCACTGCTTATGGCCTCAAGATCTCCAACACTTCATGCTGCAACGTGGATACCACC ATAGGTGGTTTATGCTTGCCTAACTCAAAACTATGCAGCAACCGGAAGGACTACGTGTTCTGGGATGCATTCCATCCTTCTGATGCAGCAAATGCAATAC TAGCAGAAAAGTTATTTTCCACCCTGTTCTCAGGCCCGCCATCTGTGGCACCAACACCTTCTCATTGA
AA sequence Show only first row Show all	>Potri.017G130100.1 pacid=42813088 polypeptide=Potri.017G130100.1.p locus=Potri.017G130100 ID=Potri.017G130100.1.v4.1 annot-version=v4.1 MAILGLALAAFILAAKATTLASAASLVTFIFGDSLTEVGNNKYLQYSLARSDYPWYGIDFPGGRATGRFTNGRTIGDIISAKLGIPSPPPFLSLSKNDDA LLTGVNYASGGAGILNDTGLYFIQKLSFYDQIECFKKTKESIRAKIGEDAANKLCNEAMYFIGLGSNDYVNNYLQPFLADGQQYTPDEFVELLISTLDKQ LSMLYQLGARKVVFHGLGPLGCIPSQRVKSKTGRCLKRVNEYVLEFNSRVKKLIATLNRRFPNAKLTFADAYGDVLDLIDNPTAYGLKISNTSCCNVDTT IGGLCLPNSKLCSNRKDYVFWDAFHPSDAANAILAEKLFSTLFSGPPSVAPTPSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37690			SGNH hydrolase-type esterase s...		Potri.017G130100 [exp]	0	1
AT5G18470			Curculin-like (mannose-binding...		Potri.013G050500 [exp]	1.73	0.9625
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G112100 [exp]	2.23	0.9662
AT3G18670			Ankyrin repeat family protein ...		Potri.015G118600 [exp]	4.89	0.9643
AT3G10310			P-loop nucleoside triphosphate...		Potri.006G048650 [exp]	6.92	0.9313
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041900 [exp]	7.21	0.9132
AT1G15780			unknown protein		Potri.001G033400 [exp]	10.72	0.9425
AT2G04039			unknown protein		Potri.002G217400 [exp]	12.84	0.9071
AT1G32780			GroES-like zinc-binding dehydr...		Potri.011G152900 [exp]	14.42	0.9370
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Potri.015G143200 [exp]	15.49	0.9093
					Potri.013G111566 [exp]	16.43	0.9222

Compare expression of checked genes

Potri.017G130100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.