Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66250 731 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 707 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G11820 595 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 486 / 7e-169 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G05790 358 / 3e-119 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 358 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 352 / 7e-117 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 352 / 2e-116 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 349 / 9e-116 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G34480 314 / 1e-101 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086400 [exp] 952 / 0 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G108500 [exp] 778 / 0 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G133200 [exp] 760 / 0 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G006100 [exp] 597 / 0 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 594 / 0 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.003G218500 [exp] 507 / 3e-177 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G006500 [exp] 491 / 6e-171 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.018G068600 [exp] 367 / 2e-122 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 350 / 6e-116 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002295 [exp] 816 / 0 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 813 / 0 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10013465 [exp] 766 / 0 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10007929 [exp] 735 / 0 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 696 / 0 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031456 [exp] 563 / 0 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 503 / 3e-175 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 464 / 1e-160 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10015151 [exp] 350 / 5e-116 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 340 / 2e-112 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.017G130200.1 pacid=42814419 polypeptide=Potri.017G130200.1.p locus=Potri.017G130200 ID=Potri.017G130200.1.v4.1 annot-version=v4.1 ATGTTCTGGAAGATGGAGTCTCTGTTTGTTCTTACACTTCTGGTCTTAGTAGCGGAAGTTTCTTTTGTTGCTGCTGATGATGAAGCATTCATTGGTGTTA ACATAGGAACAGACCTTTCTGACATGCCTCACCCAACTCAAGTAGTAGCCCTCCTCAAGGCTCAGCAAATCTGGCATGTCCGGCTCTATGATGCTGACCG TGGCATGCTAGTTGCACTTGCAAATACAGGCATTCAGGTCATGGTCTCTGTTCCCAATGACCAGCTTCTAGGAATTGGTCAGTCGAATTCAACTGCTGCT AATTGGGTTTCGCATAATATTGTAGCTCATTACCCAGCTACAAACATCACAGCCATTTGTGTAGGTTCTGAGGTTTTCACCACCATACCCAATGCAGCGC CAGTCCTTGTCAATGCCATGAAGTACATTCAATCAGCCCTTGTTGCATCCAATCTAGATCGCCAAATCAAAGTTTCAACACCCCTTTCTTCATCTATTAT CCTCGATTCCTTCCCACCATCCCAAGCCTTCTTTAACCGCTCATGGAATCCTGTTTTGATTCCCATGCTCAATTTCTTGCAGTCTACAGGGTCACACTTG ATGCTCAATATATACCCTTACTATGACTATATGCAATCAAATGGTGTGATTCCATTAGATTATGCACTCATGAAGCCTCTTGCTCCAACCAAGGAAGCTG TTGATGCTAACACACTTGTTCACTATTCTAATGTCTTTGATGCCATGGTTGATGCTGCATACTTCGCCATGAATTTTCTGAACTTCACTAACATCCCTGT CATGGTAACTGAATCTGGCTGGCCATCTAAAGGTGATACTAATGAGCCGGATGCAACTCTAGATAATGCCAACACTTACAACAGTAATTTGATTAGGCAT GTGCTGAACAAAACTGGAACCCCCAATCACCCTGGAATTGCTGTTAGTACATACATTTATGAGCTGTATAATGAAGATTTGAAACCCGGGCCAGTCTCAG AGAAGAACTGGGGATTGTTTAACGCAAATGGGGAGCCTATTTACATATTGCATCTGACTGGGGCTGGCTTAGTGCTAGCTAATGACACTACGAACCAAAC TTACTGCACTGCAAAGGAAGGCGCTGATCCAAAGATGCTGCAAGCTGCTTTGGATTGGGCTTGTGGACCTGGCAAGGTTAATTGCAGTGCTATATTGCAG GGTGAGCCATGTTACGAACCAGACAATGTGATTGCACATGCAACTTACGCATTTAACAGTTACTATAGTCGGATGGGGAAGGCTCCTGGGACATGTGACT TCAATGGCGTGGCTGCTATCACCACTACAAACCCGAGTCATGGTACCTGTTTATTCCCAGGAAGCACCGGCAAGATAAACGGTTTTGGAAACATTACAGC CCCATCAATGAATTCCACGAGCTCAGCTCCTCCTGCCCAAAATCTGTATAACCTCGGTTCTATGAGCTTCTTGCTTCTCAGAGTTCTCATCTGTAGCATA GTTTTCTTGTAA
AA sequence Show only first row Show all	>Potri.017G130200.1 pacid=42814419 polypeptide=Potri.017G130200.1.p locus=Potri.017G130200 ID=Potri.017G130200.1.v4.1 annot-version=v4.1 MFWKMESLFVLTLLVLVAEVSFVAADDEAFIGVNIGTDLSDMPHPTQVVALLKAQQIWHVRLYDADRGMLVALANTGIQVMVSVPNDQLLGIGQSNSTAA NWVSHNIVAHYPATNITAICVGSEVFTTIPNAAPVLVNAMKYIQSALVASNLDRQIKVSTPLSSSIILDSFPPSQAFFNRSWNPVLIPMLNFLQSTGSHL MLNIYPYYDYMQSNGVIPLDYALMKPLAPTKEAVDANTLVHYSNVFDAMVDAAYFAMNFLNFTNIPVMVTESGWPSKGDTNEPDATLDNANTYNSNLIRH VLNKTGTPNHPGIAVSTYIYELYNEDLKPGPVSEKNWGLFNANGEPIYILHLTGAGLVLANDTTNQTYCTAKEGADPKMLQAALDWACGPGKVNCSAILQ GEPCYEPDNVIAHATYAFNSYYSRMGKAPGTCDFNGVAAITTTNPSHGTCLFPGSTGKINGFGNITAPSMNSTSSAPPAQNLYNLGSMSFLLLRVLICSI VFL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66250			O-Glycosyl hydrolases family 1...		Potri.017G130200 [exp]	0	1
AT5G41620			unknown protein		Potri.001G096200 [exp]	2.00	0.7893
AT1G23550		SRO2	similar to RCD one 2 (.1)		Potri.006G231500 [exp]	9.89	0.7055
AT3G15380			Plasma-membrane choline transp...		Potri.011G121100 [exp]	10.39	0.7814
AT3G58690			Protein kinase superfamily pro...		Potri.014G143100 [exp]	11.40	0.7884
AT3G62110			Pectin lyase-like superfamily ...		Potri.002G186900 [exp]	12.00	0.7872
AT1G67570			Protein of unknown function (D...		Potri.012G094700 [exp]	12.72	0.7771
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.007G026700 [exp]	14.86	0.7496	CHR904,SOM1.2
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Potri.003G137800 [exp]	22.24	0.6812
AT2G42120		POLD2	DNA polymerase delta small sub...		Potri.006G192400 [exp]	24.49	0.7374
AT1G71310		RAD52-1B.2, RAD...	radiation sensitive 51-1, coba...		Potri.019G068500 [exp]	25.51	0.7335

Compare expression of checked genes

Potri.017G130200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.