Plant FIBer expression Database

Potri.017G130400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16610 389 / 4e-129 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010975
[exp]
495 / 7e-172 AT5G16610 377 / 8e-127 unknown protein
Lus10031615
[exp]
102 / 3e-26 AT5G16610 84 / 2e-20 unknown protein
Lus10000454
[exp]
88 / 2e-20 AT5G16610 70 / 9e-15 unknown protein
PFAM info
Representative CDS sequence
>Potri.017G130400.3 pacid=42813026 polypeptide=Potri.017G130400.3.p locus=Potri.017G130400 ID=Potri.017G130400.3.v4.1 annot-version=v4.1
ATGGCGCAATTGAATGGTTCAAAAGTAATTCCCATAAAATCCGAGCAAGAATTCAATGACATTGGTGATTGGTCCAACGAGCTTGACCATCTTCCTTTAC
TACAACGTCGTAAATTATTACTGTCAGGGAAACCAAATACAACGTCCAATGTTGATGTTGTTGTTAGAAAGGAGTACGAGGATTCCCAGGAAGTTTCTGT
GAGTGCCTCTTCTGCTAATGTGAGAGAAGGTTGCAAAGTTGCAGTAAATCAGTGTTTGCAGAATGGCATTGGTGGGCAAGACTTGGTTAAGTCGGGAGAT
TGCAGTATTCAGGGGACTAAAGTAAATGCATATGTTTGTTTGGATCAGAATTCAATGGTGCAGAGTCAACCTGCTGAAGCGAAGTTCGAGTGTTCGTATA
ATAATGTTCAGAGCACATTAGGAGATAGCATGACTGGTTCTGCGGGTGCTGATTTGCAAACAATTAAGGTCAAGAGTAATAGTTCTGTTGACTGTGCAGA
TGACCTTGATCATGTTGTATTGAGAGTGCGGCAAGGGATGCTGCTATCAAGGAAAATGTTGAGGTTGGAAAAGACAAATTTGGAGGGATTGAACATGGAG
TCAAATTCATGCCAGAAACTGCATTTCATGCCTGCAACAGCTGATAGTATGGCTAGCTCAAGTTTATCAACCATGATCAATGTCAAGGCTGAACCATTGG
ATAACAATGAATTGCACAACTCGGACAGAATCAGTGTCTCTAATTTCTCCATTAACAAGGTGCCAGTGAAGACTGAACTTGAAATCCCCAATAAACTGTA
CAAAGACAAGTTGGATCATATGCAATTGCAAGATCGCATCAAAATGCCGACCAAATGGAAGAGTTCTAAATCAAAGATTTCAGGGAATTCTGAATGTTTG
CGTAAAGCCATCCCTTCTGATGTTGAGTATGGCTCGACTGTTCCAGACCCAATAAGGTTCATCCAACCACGGAAAAGGAAGAAAACCGCCACGGATTCTG
CTGAAACAGCACTGGAGGAAGATGCTCCTGGACTTCTGCAGGTGTTAGTTGAACAAGGGGTATCTCTTGAAGAAATCAAGCTTTATGGAGAGGCAGATAA
TGATGAGGCCATAGACGAATCATTTATTGAAGATGGATTTGGAGAGCTTGAAGCTGTTATGTCAAAGCTACTTTTCCAGCGTAGCTCCTTACTAAAGCTC
GCTCCCATACAATGTGCGAAGGCCTCAAGACCTAGTTATTGTTTGGAATGTCTCTTCTCCCTTGTAGAGCAGACACGGCATCTTCGGTTTCGTAATTGGC
CTGCTGAATGGGGTTGGTGCCGAGATCTTCAGTCATTTGTATTTGTCTTTAAAAAGCATAACAGAATAGTGCTGGAACGCCCTGAATATGGCTATGCAAC
ATATTTCTTTGAGCTGGTAGATTCCATATCCATTGATTGGCAGATTAAGCGTCTGGTGACTGCCATGAAACTTACCAACTGTGGCAGGGTTAGTGTGGTT
GAGAACAGACCATTATCGGTTGGTGAAGACATAACTGAAGGCGAGGCTCAGGTGTTGATGCAGTATGGGTGGACACCTAATAGTGGTTTAGGAACCATGC
TAAACTACTGTGACAGAGTTTTTCATGACAGGAAGAATGAGAAGGATAGCTCAGAGTGGAGATCAAAAATAGGGAAATTGTTGATGAATGGTTATAATGG
TGGAAGTATTGTTTCAAACAATATCGAGACAGAGCTTATACAGCATACCAGTGCTGAGAGCCCACAAATTAAGATGGAGCTTTAG
AA sequence
>Potri.017G130400.3 pacid=42813026 polypeptide=Potri.017G130400.3.p locus=Potri.017G130400 ID=Potri.017G130400.3.v4.1 annot-version=v4.1
MAQLNGSKVIPIKSEQEFNDIGDWSNELDHLPLLQRRKLLLSGKPNTTSNVDVVVRKEYEDSQEVSVSASSANVREGCKVAVNQCLQNGIGGQDLVKSGD
CSIQGTKVNAYVCLDQNSMVQSQPAEAKFECSYNNVQSTLGDSMTGSAGADLQTIKVKSNSSVDCADDLDHVVLRVRQGMLLSRKMLRLEKTNLEGLNME
SNSCQKLHFMPATADSMASSSLSTMINVKAEPLDNNELHNSDRISVSNFSINKVPVKTELEIPNKLYKDKLDHMQLQDRIKMPTKWKSSKSKISGNSECL
RKAIPSDVEYGSTVPDPIRFIQPRKRKKTATDSAETALEEDAPGLLQVLVEQGVSLEEIKLYGEADNDEAIDESFIEDGFGELEAVMSKLLFQRSSLLKL
APIQCAKASRPSYCLECLFSLVEQTRHLRFRNWPAEWGWCRDLQSFVFVFKKHNRIVLERPEYGYATYFFELVDSISIDWQIKRLVTAMKLTNCGRVSVV
ENRPLSVGEDITEGEAQVLMQYGWTPNSGLGTMLNYCDRVFHDRKNEKDSSEWRSKIGKLLMNGYNGGSIVSNNIETELIQHTSAESPQIKMEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G16610 unknown protein Potri.017G130400
[exp]
0 1
AT3G19770 ATVPS9A ARABIDOPSIS THALIANA VACUOLAR ... Potri.013G092100
[exp]
5.38 0.7695
AT1G21610 wound-responsive family protei... Potri.007G101201
[exp]
9.53 0.7406
AT2G39580 unknown protein Potri.010G208200
[exp]
12.84 0.7533
AT5G51230 C2H2ZnF AtEMF2, CYR1, V... CYTOKININ RESISTANT 1, EMBRYON... Potri.001G080200
[exp]
17.37 0.7564 VEF901,Pt-VRN2.5
AT4G38180 FAR1_related FRS5 FAR1-related sequence 5 (.1) Potri.017G091000
[exp]
19.74 0.6849
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.001G242333
[exp]
23.81 0.6600
AT5G10940 ASG2 ALTERED SEED GERMINATION 2, tr... Potri.002G103132
[exp]
27.11 0.7024
AT3G50430 unknown protein Potri.005G133500
[exp]
27.92 0.7409
AT1G61690 phosphoinositide binding (.1) Potri.004G030500
[exp]
30.82 0.6958
AT2G02570 nucleic acid binding;RNA bindi... Potri.004G229200
[exp]
31.73 0.7049

Potri.017G130400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.