Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37680 355 / 3e-127 ATARLA1A ADP-ribosylation factor-like A1A (.1) AT5G67560 320 / 3e-113 ATARLA1D ADP-ribosylation factor-like A1D (.1) AT3G49870 319 / 8e-113 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT3G49860 253 / 6e-87 ATARLA1B ADP-ribosylation factor-like A1B (.1) AT1G23490 115 / 2e-32 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT1G10630 115 / 2e-32 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G70490 115 / 2e-32 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT5G14670 114 / 3e-32 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G47170 114 / 3e-32 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 114 / 3e-32 ATARFA1E ADP-ribosylation factor A1E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086200 [exp] 363 / 4e-130 AT5G37680 328 / 1e-116 ADP-ribosylation factor-like A1A (.1) Potri.001G293100 [exp] 326 / 1e-115 AT3G49870 348 / 1e-124 ADP-ribosylation factor-like A1C (.1) Potri.009G087400 [exp] 322 / 5e-114 AT3G49870 349 / 5e-125 ADP-ribosylation factor-like A1C (.1) Potri.013G005500 [exp] 117 / 3e-33 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.010G152600 [exp] 115 / 1e-32 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 115 / 1e-32 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 115 / 2e-32 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 115 / 2e-32 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 115 / 2e-32 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019259 [exp] 327 / 5e-116 AT3G49870 355 / 5e-127 ADP-ribosylation factor-like A1C (.1) Lus10012090 [exp] 325 / 3e-115 AT3G49870 353 / 2e-126 ADP-ribosylation factor-like A1C (.1) Lus10025201 [exp] 323 / 2e-114 AT3G49870 353 / 1e-126 ADP-ribosylation factor-like A1C (.1) Lus10011545 [exp] 231 / 8e-79 AT3G49870 243 / 9e-84 ADP-ribosylation factor-like A1C (.1) Lus10031436 [exp] 114 / 3e-32 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 114 / 5e-32 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 115 / 6e-32 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 115 / 3e-31 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10013020 [exp] 115 / 1e-30 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10029144 [exp] 114 / 7e-30 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family
Representative CDS sequence Show only first row Show all	>Potri.017G130500.1 pacid=42814406 polypeptide=Potri.017G130500.1.p locus=Potri.017G130500 ID=Potri.017G130500.1.v4.1 annot-version=v4.1 ATGGGTCTCTTTGATTCCCTTCTAAACTGGCTCAGGAGCTTATTCTTTAAACAAGAAATGGAGCTATCCCTTGTAGGCCTTCAGAATGCTGGAAAGACAT CTCTTGTTAATTCCATTGCTACAGGTGGCTACAGTGAGGACATGATTCCAACTGTTGGATTCAACATGCGAAAAGTTACAAAAGGCAATGTGACGATAAA GCTTTGGGATCTTGGAGGGCAGCGGAGGTTTCGTACAATGTGGGAGCGTTATTGTCGTGGAGTCTCTGCGATTCTATATGTAGTTGATGCAGCTGACAGG GACAGCGTTCCCCTATCTAGAAGTGAGTTACATGACCTCCTAACCAAACCTTCCTTAAGCGGAATCCCTTTGCTTGTCGTTGGCAACAAAATTGACAAGC CAGAAGCTTTTTCCAAGCAAGCTTTGGTGGATCAGCTAGGTCTTGAATCAATCACAGATAGAGAGGTTTGCTGCTACATGATCTCATGCAAGGACTCCAC AAACATAGACATTGTCATTGATTGGCTTATCAAGCACTCAAAAACAGCAACAGGATCTGTAGCTTGA
AA sequence Show only first row Show all	>Potri.017G130500.1 pacid=42814406 polypeptide=Potri.017G130500.1.p locus=Potri.017G130500 ID=Potri.017G130500.1.v4.1 annot-version=v4.1 MGLFDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR DSVPLSRSELHDLLTKPSLSGIPLLVVGNKIDKPEAFSKQALVDQLGLESITDREVCCYMISCKDSTNIDIVIDWLIKHSKTATGSVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37680		ATARLA1A	ADP-ribosylation factor-like A...		Potri.017G130500 [exp]	0	1
AT1G61780			postsynaptic protein-related (...		Potri.004G021200 [exp]	6.00	0.7289
AT1G20460			unknown protein		Potri.002G013000 [exp]	8.00	0.6927
AT4G23895			Pleckstrin homology (PH) domai...		Potri.003G140500 [exp]	9.32	0.6964
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Potri.018G086800 [exp]	12.00	0.6838
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.005G019100 [exp]	17.17	0.6918
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Potri.003G180800 [exp]	21.65	0.6701	GOS11.2
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.012G121596 [exp]	23.66	0.6170
AT5G19070			SNARE associated Golgi protein...		Potri.008G202600 [exp]	31.24	0.6690
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.015G085700 [exp]	39.19	0.6536
AT3G55380		UBC14	ubiquitin-conjugating enzyme 1...		Potri.008G053900 [exp]	41.78	0.6690	Pt-UBC7.1

Compare expression of checked genes

Potri.017G130500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.