Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37660 314 / 1e-107 PDLP7 plasmodesmata-located protein 7 (.1.2) AT2G01660 287 / 3e-97 PDLP6 plasmodesmata-located protein 6 (.1.2) AT1G70690 207 / 1e-65 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT3G60720 181 / 1e-55 PDLP8 plasmodesmata-located protein 8 (.1) AT2G33330 94 / 4e-22 PDLP3 plasmodesmata-located protein 3 (.1) AT1G04520 88 / 4e-20 PDLP2 plasmodesmata-located protein 2 (.1) AT5G43980 80 / 3e-17 PDLP1, PDLP1A PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) AT1G63570 72 / 2e-14 Receptor-like protein kinase-related family protein (.1) AT5G48540 72 / 2e-14 receptor-like protein kinase-related family protein (.1) AT1G63550 69 / 2e-13 Receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086000 [exp] 439 / 4e-157 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.008G133500 [exp] 299 / 1e-101 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.010G108100 [exp] 296 / 1e-100 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.014G067000 [exp] 186 / 2e-57 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1) Potri.002G145400 [exp] 169 / 3e-51 AT3G60720 243 / 8e-80 plasmodesmata-located protein 8 (.1) Potri.002G257300 [exp] 115 / 3e-30 AT1G04520 243 / 2e-79 plasmodesmata-located protein 2 (.1) Potri.010G065800 [exp] 92 / 2e-21 AT1G04520 337 / 2e-116 plasmodesmata-located protein 2 (.1) Potri.008G171700 [exp] 86 / 2e-19 AT1G04520 349 / 3e-121 plasmodesmata-located protein 2 (.1) Potri.002G249600 [exp] 79 / 5e-17 AT5G48540 256 / 7e-86 receptor-like protein kinase-related family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020814 [exp] 317 / 1e-108 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2) Lus10016710 [exp] 234 / 6e-76 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2) Lus10036006 [exp] 183 / 2e-55 AT2G01660 233 / 1e-74 plasmodesmata-located protein 6 (.1.2) Lus10010362 [exp] 150 / 1e-42 AT3G60720 259 / 7e-85 plasmodesmata-located protein 8 (.1) Lus10036497 [exp] 104 / 5e-26 AT3G60720 210 / 9e-67 plasmodesmata-located protein 8 (.1) Lus10001052 [exp] 94 / 3e-22 AT5G43980 234 / 1e-75 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10014475 [exp] 91 / 4e-21 AT1G04520 391 / 1e-137 plasmodesmata-located protein 2 (.1) Lus10023726 [exp] 91 / 5e-21 AT1G04520 389 / 2e-136 plasmodesmata-located protein 2 (.1) Lus10006752 [exp] 70 / 9e-14 AT5G48540 100 / 1e-24 receptor-like protein kinase-related family protein (.1) Lus10018377 [exp] 71 / 2e-13 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.017G130800.1 pacid=42812967 polypeptide=Potri.017G130800.1.p locus=Potri.017G130800 ID=Potri.017G130800.1.v4.1 annot-version=v4.1 ATGGGAAGAACAACAAGTTCAACACTTCTCTTAACCTTGACGTTCCTCTTCTCTTTGTCATCTCTCCCTAGCCCTTCACTTTCAGATTCAACAGACGCAT TTGTCATTGGAGGCTGTACTCAAGAAAAATATGTACAAGACTCACCTTATGAGTCCAACCTTAATTCTCTCCTTACTTCTCTTGTCAACTCAGCCACTTA CTCTTCTTACAACAACTATACCATCATGGGCTCAAGCACACAAGATGTTGTTTATGGTCTTTACCAGTGCCGCGGTGACCTGTCAATGCCGGATTGTGCC ACGTGTGTCGCTCGAGCAGTGAGTCAACTCGGTGTCCTATGTGCTCAGACCTGTGGTGGAGCACTGCAGCTACAAGGATGTTATGTGAAGTATGATAACA CGACGTTTTTGGGTGTGGAAGATAAGACCGTGGTGTTGAAGAAATGTGGACCTTCGGTTGGGTACGATACGGATGCTATGAACCTTAGGGATGCAGTGTT AGGGAGCTTGGCTGGGACAAGTGGGCTTTACCGGGTTGGTGGGTCGGGTAATGTCCAGGGGGTGGCTCAATGTGTCGGTGACCTGAGCGTCGAAGAATGC CAGGATTGTTTGTCGGAGGCGATCGGACGGCTGAAATCAGACTGCGGCACTGCGGATTACGGTGATATGTTCTTGGCTAAGTGCTATGCTAGGTACACCA CCGGTGGGCCTCATGCTTATTCCAAGGCTCATAGTGATAAATATACCAATGATGGTGAGAAGACATTTGCAATTATTGTTGGAATATTGGCTGGAGTGGC ATTGGTCATCATTTTTCTTGCTTTCCTGGGAAAGGTGTTTGGAGGAAATGGAAAATAA
AA sequence Show only first row Show all	>Potri.017G130800.1 pacid=42812967 polypeptide=Potri.017G130800.1.p locus=Potri.017G130800 ID=Potri.017G130800.1.v4.1 annot-version=v4.1 MGRTTSSTLLLTLTFLFSLSSLPSPSLSDSTDAFVIGGCTQEKYVQDSPYESNLNSLLTSLVNSATYSSYNNYTIMGSSTQDVVYGLYQCRGDLSMPDCA TCVARAVSQLGVLCAQTCGGALQLQGCYVKYDNTTFLGVEDKTVVLKKCGPSVGYDTDAMNLRDAVLGSLAGTSGLYRVGGSGNVQGVAQCVGDLSVEEC QDCLSEAIGRLKSDCGTADYGDMFLAKCYARYTTGGPHAYSKAHSDKYTNDGEKTFAIIVGILAGVALVIIFLAFLGKVFGGNGK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37660		PDLP7	plasmodesmata-located protein ...		Potri.017G130800 [exp]	0	1
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.001G451700 [exp]	2.44	0.9363
					Potri.010G242050 [exp]	2.64	0.9202
AT5G03120			unknown protein		Potri.006G130400 [exp]	3.46	0.9460
AT1G29730			Leucine-rich repeat transmembr...		Potri.010G155000 [exp]	4.47	0.9344
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G165300 [exp]	5.00	0.9299
AT3G16070			unknown protein		Potri.001G182500 [exp]	7.74	0.9009
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.001G267700 [exp]	8.00	0.9094
AT1G03440			Leucine-rich repeat (LRR) fami...		Potri.014G136100 [exp]	9.94	0.8357
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G165450 [exp]	12.00	0.9025
AT1G71140			MATE efflux family protein (.1...		Potri.004G093400 [exp]	12.40	0.8978

Compare expression of checked genes

Potri.017G130800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.