Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09680 669 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 288 / 1e-87 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 278 / 9e-84 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G09820 266 / 1e-80 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G01110 265 / 3e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 266 / 3e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 259 / 7e-77 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15630 250 / 1e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 245 / 8e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G12100 245 / 2e-71 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 290 / 2e-88 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 280 / 1e-84 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.004G147700 [exp] 271 / 2e-82 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 271 / 3e-81 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098400 [exp] 267 / 1e-79 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G014500 [exp] 265 / 7e-79 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 263 / 1e-78 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034300 [exp] 254 / 6e-78 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034400 [exp] 256 / 1e-76 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012037 [exp] 278 / 1e-84 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 275 / 9e-83 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 261 / 1e-77 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 259 / 4e-77 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 264 / 6e-77 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 256 / 2e-76 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10034421 [exp] 251 / 3e-74 AT2G02150 706 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 249 / 8e-73 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10032174 [exp] 244 / 9e-73 AT5G38730 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008650 [exp] 248 / 3e-72 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G131400.5 pacid=42813243 polypeptide=Potri.017G131400.5.p locus=Potri.017G131400 ID=Potri.017G131400.5.v4.1 annot-version=v4.1 ATGAATGCAGCAACAAACCAAGAAACAAATGAAATGGCTACTTTCAAACTCCCTAAAACCCACCTCTCTCCTCCAAAAACCCTCTGCGCCTTCTCCACTT GGTACTCACCACCCCCACAACCCCCACCAAGACAGTCGCCGCCGCCTTCACGCCATGAATCTCCAATTCTCACAACGATCTCTGAAGCAATAAAAAACAT TGAAACAAAACCACTTCACATTTCTCTCAAAAACATCCTACCTTCATTCAAAGCCCATCACTTTATTAGCCTCGTTAACCAAAATCCTTACTTTCTACCT CCAAAATCCCTCCTTTCTTTCTTTGACTTTCTATCTTCATACCCTACGTTTAGCCACACAGTTCAGTCTTATTGCAGTATGGTTCATTTCCTCATTGCAC ATCGAATGAACCAACAAGCTGAGTCTTTGCTTCATTTTGTTGTTTCACGTAAAGGGAAAGGATCAGCTTCTTCAGTTTTTGCTTCAATTCTTGAAACTAA AGGTACCCTTTCGTCAAGTTTTGTTTTTGATGCTTTAATGAGTGTGTATACTGAATTTGGTTACGTGTCTGATGCTATTCAGTGTTTTAGATTGACAAAG AAGCATAATTTGAAAATCCCGTTTAATGGTTGCAAGTGTTTGCTTGAAAGAATGATTAAAATGAGCTCTCCTATGGTAGCTTTGGAGTTTTATCTGGAGA TCTTGGATTCTGGGTATCCACCAAATGTGTATACTTTTAATGTTTTAATGAATAGATTGTGTAAAGAAGGTAAAGTTAAGGATGCTCAATTGATTTTTGA TGAAATTCGGAAGACAGGTCTGCAGCCCACTGCTGTTAGTTTTAATACTTTGATTAATGGTTATTGTAAATCAGGAAATTTAGAGGAGGGTTTTAGGTTG AAGATGGTAATGGAGGAGTTTAGGGTTTTCCCTGATGTTTTTACTTATAGTGCTTTGATTGATGGGTTGTGTAAGGAGTGTCAGTTGGATGATGCGAATC ATTTGTTTAAGGAAATGTGTGATAGAGGGCTGGTTCCTAATGATGTTACTTTTACCACATTGATTAATGGGCAGTGCAAGAATGGGAGAGTTGATTTGGC CTTGGAAATTTATCAGCAAATGTTTACTAAAGGTTTGAAAGCTGATTTGGTCTTGTACAATACACTCATCGATGGCCTTTGTAAGGGTGGATATTTTAGG GAAGCAAGGAAGTTTGTTGGCGAGATGACTAAGAGAGGTTTGATACCTGATAAATTTACGTACACTACACTTCTAGATGGTAGTTGCAAGGAAGGAGATT TAGAATTGGCTTTGGAGATGAGGAAGGAAATGGTAAAAGAAGGTATTCAGCTGGATAATGTAGCCTTCACAGCCATTATTTCTGGATTGTGTAGAGATGG AAAGATTGTAGATGCAGAGAGAACATTGAGGGAGATGTTGAGAGCGGGTTTGAAACCAGATGATGGTACATATACCATGGTCATGGATGGGTTCTGTAAG AAGGGTGATGTGAAGATGGGATTTAAGTTGCTCAAAGAGATGCAGAGCGATGGACATATACCAGGAGTGATCACTTACAATGTGCTTATGAATGGACTCT GCAAGCAAGGCCAGGTGAAAAATGCTGATATGCTTTTGAATGCAATGCTCAATGTGGGTGTAGTTCCAGATGACATTACTTACAACATTTTATTACAAGG GCATTGCAAACATGGGAAACTAGGAGACTTCCAAAATGTCAAGACTGAAATGGGGCTTGTTTCTGACTATGCATCTTATAGATCACTACTGAATGAGTTG AGCAAAGCTTCTAAAGATCGTCAAAAGAGATGA
AA sequence Show only first row Show all	>Potri.017G131400.5 pacid=42813243 polypeptide=Potri.017G131400.5.p locus=Potri.017G131400 ID=Potri.017G131400.5.v4.1 annot-version=v4.1 MNAATNQETNEMATFKLPKTHLSPPKTLCAFSTWYSPPPQPPPRQSPPPSRHESPILTTISEAIKNIETKPLHISLKNILPSFKAHHFISLVNQNPYFLP PKSLLSFFDFLSSYPTFSHTVQSYCSMVHFLIAHRMNQQAESLLHFVVSRKGKGSASSVFASILETKGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTK KHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRL KMVMEEFRVFPDVFTYSALIDGLCKECQLDDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFR EARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCK KGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNVGVVPDDITYNILLQGHCKHGKLGDFQNVKTEMGLVSDYASYRSLLNEL SKASKDRQKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09680			Pentatricopeptide repeat (PPR)...		Potri.017G131400 [exp]	0	1
AT2G45000		EMB2766	EMBRYO DEFECTIVE 2766, structu...		Potri.014G057000 [exp]	5.29	0.8476
AT1G75200			flavodoxin family protein / ra...		Potri.002G260700 [exp]	7.74	0.8422
					Potri.016G080101 [exp]	11.22	0.8046
AT3G07660			Kinase-related protein of unkn...		Potri.014G169900 [exp]	12.16	0.8212
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.003G002950 [exp]	13.22	0.8163
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Potri.001G256000 [exp]	15.29	0.7892
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.003G164300 [exp]	22.13	0.7852
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G237050 [exp]	26.53	0.7845
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Potri.015G110066 [exp]	26.64	0.7885
					Potri.001G239304 [exp]	28.49	0.7113

Compare expression of checked genes

Potri.017G131400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.