Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11690 632 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 254 / 3e-76 RPF2 rna processing factor 2 (.1) AT5G65560 249 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 246 / 2e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 243 / 3e-72 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 244 / 8e-72 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 240 / 4e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 241 / 2e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15630 233 / 2e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 233 / 2e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G147700 [exp] 287 / 1e-88 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 266 / 7e-80 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G069600 [exp] 253 / 4e-75 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 249 / 2e-73 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G130600 [exp] 237 / 3e-71 AT1G12700 330 / 3e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 239 / 7e-71 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 238 / 7e-71 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 240 / 8e-71 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 236 / 8e-70 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037319 [exp] 648 / 0 AT4G11690 534 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10035735 [exp] 634 / 0 AT4G11690 526 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027914 [exp] 273 / 2e-82 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 272 / 4e-82 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 273 / 8e-81 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 261 / 1e-78 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 256 / 1e-75 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 251 / 6e-73 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 249 / 2e-72 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 237 / 4e-69 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G131600.1 pacid=42813509 polypeptide=Potri.017G131600.1.p locus=Potri.017G131600 ID=Potri.017G131600.1.v4.1 annot-version=v4.1 ATGCAAGAAATGGGGAAGCAGCAAGCTCTAATTTTGATCCAGAAAATGGTGAAAATCCCTCCTCTTCAAGCCTTATCACTCTTCAACTCCTCGATTCAAC AAGGCTTCCAACACACTCACCACTCCATTTCTTTCCTTCTTCAACACCTTCTTGACCATCACAAACTACCCCATGCACAATCTCTCATCCTCCAAATACT TTCCAACAAAATCTCCTCTCCCTTTTTCACTGTCCCATCTCTTCTCCACCATTTAACACAAAACCAAAACCCATCAATGACTACTGCTCTTCTCTATGAA TCAATCATCAATGCCCATCTTAAATCTCAATTACTAGATAAGGCTCTCATCTTTTTCAATGAAATGGTTGATAAAGGCCTTGTCTTTCGACCTAACATTT TTAATAGTCTCTTGGGTTCTCTTGTGAGATCAAATTGTTTTGAGAAAGCTTGGTTGTTTTTTAATGAATTGAAAGAGAGGGTTAAGTTTGATGTCTATAG TTTTGGAATAATGATCAAGGGTTGTTGTGAAAATGGTAATTTGGATAAAAGTTTTCAACTTTTGGGTCTATTACAGGACATGGGTCTTTCTCCTAATGTT GTCATATACACTACTTTGATTGATGGTTGTTGTAAGAATGGTGATATTGAAAGAGCTAGGTTGTTTTTTGATAAGATGGGAGAGATGGGTTTGGTTGCTA ATCAGTATACTTTTACGGTATTGATTAATGGGTTGTTTAAGAAAGGACTTAAGAAAGATGGTTTTGATTTGTTTGAGAAGATGAAGATTAATGGGCTGTT TCCCAATTTGTATACGTATAATTGTTTGATGAATGAGTATTGCGGTGAAGGAAAAATATGCAGAGCTTTTGACTTGTTTGATGAAATGCGTGAGAGAGGT GTAGAAGCAAATGTTGTCACGTATAATACTTTGATCGGTGGCATGTGTAGAGAGGAGAGGGTTTGGGAGGCTGAGAAGTTGGTGGATCAAATGAAGAAAG CTGCTGTTAGTCCTAATTTAATCACATATAACACATTAATAGGTGGATTTTGTGATGTTGGGAATTTGGATAAGGCTTCAAGTTTACTAGATCAATTAAA GTCAAATGGTCTGTCTCCATCTTTGGTGACCTACAATATTCTCATTGAAGGATATTCCAAGGCTGGAAATTGGAAAGGAGTTGCTGATTTAGCAAGGGAG ATGGAGGGGAGAGGCATTTCTCCTTCTAAAGTGACATGTACAGTTTTAATTGATGCTTATGTTCGATTGCAAGAAATGGAGAAAGCATTTCAAATTTATT CCTCTATGGAGAAGTTTGGTTTGGTTCCTGATGTCTACGTCTATGGTGTGCTAATACATGGTTTGTGCATGAAAGGTAACATGAAAGAATCATCAAAACT GTTTAGATCAATGGGTGAAATGCACGTGGAACCAAGTGACGTGATATACAATACAATGATCCATGGTTACTGCAAAGAGGATAACTCCTATAGGGCTTTG AGGTTGCTTAGAGAAATGGAAGCTAAGGGGTTGGTTCCAAATGTGGCTAGCTACAGTTCTATCATCGGAGTTCTATGCAAGGATGGGAAGTGGGAAGAAG CTGAGGTTTTATTAGACAAGATGATAGAATTGCAACTAAAACCGTCAGCTTCCATCTTAAACATGATCTCCAAAGCCAAAAATTTTACAGAATTGAAGAT TTAA
AA sequence Show only first row Show all	>Potri.017G131600.1 pacid=42813509 polypeptide=Potri.017G131600.1.p locus=Potri.017G131600 ID=Potri.017G131600.1.v4.1 annot-version=v4.1 MQEMGKQQALILIQKMVKIPPLQALSLFNSSIQQGFQHTHHSISFLLQHLLDHHKLPHAQSLILQILSNKISSPFFTVPSLLHHLTQNQNPSMTTALLYE SIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNV VIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERG VEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLARE MEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRAL RLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILNMISKAKNFTELKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11690			Pentatricopeptide repeat (PPR-...		Potri.017G131600 [exp]	0	1
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.012G135600 [exp]	16.34	0.6191
AT4G14820			Pentatricopeptide repeat (PPR)...		Potri.010G086200 [exp]	27.20	0.5968
AT1G43980			Tetratricopeptide repeat (TPR)...		Potri.005G185300 [exp]	30.46	0.5973
					Potri.003G157401 [exp]	41.32	0.5579
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	43.39	0.5840
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G034300 [exp]	58.65	0.5553
AT3G15130			Tetratricopeptide repeat (TPR)...		Potri.006G244500 [exp]	71.74	0.5535
AT3G11460			Pentatricopeptide repeat (PPR)...		Potri.006G211400 [exp]	83.13	0.5448
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Potri.004G115800 [exp]	157.33	0.4785	HYP1.1
AT2G04340			unknown protein		Potri.001G241100 [exp]	176.23	0.4631

Compare expression of checked genes

Potri.017G131600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.