Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19940 104 / 4e-26 Major facilitator superfamily protein (.1) AT1G50310 102 / 2e-25 ATSTP9 sugar transporter 9 (.1) AT4G02050 99 / 4e-24 STP7 sugar transporter protein 7 (.1) AT5G26340 98 / 8e-24 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT3G19930 96 / 4e-23 ATSTP4, STP4 sugar transporter 4 (.1) AT1G77210 89 / 7e-21 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT5G23270 87 / 5e-20 ATSTP11, STP11 sugar transporter 11 (.1) AT3G05960 86 / 2e-19 ATSTP6 sugar transporter 6 (.1) AT1G11260 84 / 5e-19 ATSTP1, STP1 sugar transporter 1 (.1) AT5G26250 81 / 7e-18 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G109765 [exp] 125 / 7e-34 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G101950 [exp] 125 / 1e-33 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G101900 [exp] 125 / 1e-33 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G110630 [exp] 123 / 6e-33 AT1G11260 629 / 0.0 sugar transporter 1 (.1) Potri.010G089800 [exp] 100 / 2e-24 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.006G189100 [exp] 100 / 2e-24 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.001G110400 [exp] 96 / 3e-23 AT1G11260 658 / 0.0 sugar transporter 1 (.1) Potri.018G113300 [exp] 96 / 7e-23 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.016G120700 [exp] 94 / 3e-22 AT5G61520 570 / 0.0 Major facilitator superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013441 [exp] 105 / 3e-26 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10010534 [exp] 96 / 8e-23 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 94 / 3e-22 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10036325 [exp] 91 / 3e-21 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10040993 [exp] 90 / 4e-21 AT1G50310 601 / 0.0 sugar transporter 9 (.1) Lus10010532 [exp] 88 / 3e-20 AT5G26250 588 / 0.0 Major facilitator superfamily protein (.1) Lus10021924 [exp] 87 / 5e-20 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002452 [exp] 86 / 2e-19 AT5G26250 655 / 0.0 Major facilitator superfamily protein (.1) Lus10009656 [exp] 85 / 4e-19 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2) Lus10020934 [exp] 82 / 4e-18 AT1G34580 664 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.017G131700.3 pacid=42813214 polypeptide=Potri.017G131700.3.p locus=Potri.017G131700 ID=Potri.017G131700.3.v4.1 annot-version=v4.1 ATGAATGAACCAAGATTTTTAGCATGGAGCTGGAAATGCCAGACCAACTGCAAGGATCTTCATCTGAGGCATCCCAACAAAACGATACCTGGGCCGTCGT ACAAAGCTTTCTTTGAATTTTCTGCTATCTGCAACCAGATTCTGCAATATGGGTGCAAAAATGAGCCTGCTAGCATCACAGGTATAGTTGTGGCATGTAT CTGCTTCTTTGTTCCTGCTTTCTCAATGCCAAGTGAAATCCGGTCAGCCGAGCAAAGCATTGCACTCTCGGTTAACATGTTTTTCGCCTTCTCTATTGCT CAATTGTTTCTTCCTGTGCTTTCCCCCATGAAATGTGGCTTGTTCATCTTCTTTGCGAGTTTTGTGGCAATTATGACTTCTTTATTTATTCCTTTCTTGC CTGAAAGAAAGCACGTACCAATTGAAGAGATGTATAAAGTGTGGAAAGAACATTTGTTTTGGAGGAAATTCATGCCTGTAGATGATCACCGAGCAAATGT CACCTCCAATGGAGAACCTTATTTCAGGCATCCAACCGGGAGGCATTTTGTGCTAAAGCTTCAGAGTATCGTTTCTCCAACTCGAAACATGTAA
AA sequence Show only first row Show all	>Potri.017G131700.3 pacid=42813214 polypeptide=Potri.017G131700.3.p locus=Potri.017G131700 ID=Potri.017G131700.3.v4.1 annot-version=v4.1 MNEPRFLAWSWKCQTNCKDLHLRHPNKTIPGPSYKAFFEFSAICNQILQYGCKNEPASITGIVVACICFFVPAFSMPSEIRSAEQSIALSVNMFFAFSIA QLFLPVLSPMKCGLFIFFASFVAIMTSLFIPFLPERKHVPIEEMYKVWKEHLFWRKFMPVDDHRANVTSNGEPYFRHPTGRHFVLKLQSIVSPTRNM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19940			Major facilitator superfamily ...		Potri.017G131700 [exp]	0	1
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Potri.008G008476 [exp]	5.65	0.7284
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.008G010800 [exp]	25.98	0.7191
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.010G197200 [exp]	48.90	0.6765
AT1G13195			RING/U-box superfamily protein...		Potri.010G053000 [exp]	79.10	0.6398
AT4G15720			Tetratricopeptide repeat (TPR)...		Potri.008G217000 [exp]	108.77	0.6205
AT4G23330			unknown protein		Potri.001G103800 [exp]	122.80	0.6203
AT3G17810		PYD1	pyrimidine 1 (.1)		Potri.012G043300 [exp]	172.51	0.5489
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G028200 [exp]	226.54	0.5356
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Potri.004G207600 [exp]	231.44	0.5204	Pt-XCP1.1

Compare expression of checked genes

Potri.017G131700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.