Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37540 570 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G66180 570 / 0 Eukaryotic aspartyl protease family protein (.1) AT2G39710 231 / 3e-71 Eukaryotic aspartyl protease family protein (.1) AT5G02190 218 / 8e-66 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT3G25700 129 / 9e-33 Eukaryotic aspartyl protease family protein (.1.2) AT2G03200 127 / 3e-32 Eukaryotic aspartyl protease family protein (.1) AT3G18490 117 / 2e-28 Eukaryotic aspartyl protease family protein (.1) AT3G12700 116 / 3e-28 Eukaryotic aspartyl protease family protein (.1.2) AT3G54400 114 / 1e-27 Eukaryotic aspartyl protease family protein (.1) AT3G52500 103 / 8e-24 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G085000 [exp] 686 / 0 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087600 [exp] 234 / 2e-72 AT5G02190 548 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.010G201400 [exp] 227 / 2e-69 AT2G39710 583 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G058000 [exp] 221 / 3e-67 AT2G39710 607 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 134 / 8e-35 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 127 / 5e-32 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 125 / 9e-32 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 120 / 1e-29 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G000600 [exp] 116 / 3e-28 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002707 [exp] 234 / 5e-72 AT2G39710 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10004713 [exp] 233 / 2e-71 AT2G39710 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10040279 [exp] 230 / 2e-71 AT2G39710 566 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024375 [exp] 228 / 1e-69 AT5G02190 572 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10000514 [exp] 218 / 6e-67 AT2G39710 541 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010854 [exp] 125 / 2e-33 AT5G02190 294 / 4e-99 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 120 / 1e-29 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 112 / 7e-27 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 113 / 9e-27 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10010855 [exp] 109 / 2e-25 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.017G131800.1 pacid=42813844 polypeptide=Potri.017G131800.1.p locus=Potri.017G131800 ID=Potri.017G131800.1.v4.1 annot-version=v4.1 ATGCTTCTTTTTTACCTCTTCCTCCTACTCACCTCCTGCTCCCTCTCAGCACAAGAAACCCAGCACAAGAATGACTCCCTTTCCTTTTCTTTCCCACTCA CTTCCCTCCCTCGCTCCCCACAAGCCTCTCCAAATTTCTACCCTTCCTTCATCTCACAAACCAAGAAAGCCTCAACACTCAAAAGTTCTTCCTTTTCCTC ATCGCCATATAACTACAGGTCAGGATTCAAGTACTCGATGATATTGCTAGTCTCTCTCCCTATAGGGACACCACCTCAAACTCAGCAAATGATTTTGGAC ACGGGCAGCCAGTTGTCATGGATTCAGTGTCACAAAAAGGTTCCTAGGAAACCCCCACCTAGCTCTGTGTTTGATCCTTCTTTATCCTCTTCATTCTCTG TTTTGCCATGTAATCATCCTCTTTGCAAGCCCAGAATTCCTGATTTTACCCTACCAACGTCATGCGACCAGAACCGTTTGTGTCATTATTCTTACTTCTA CGCCGATGGAACATTAGCTGAAGGTAATCTTGTAAGGGAAAAGATTACATTTTCTAGGTCCCAAAGTACCCCTCCTTTGATCTTAGGCTGCGCCGAGGAA TCAAGTGATGCCAAGGGCATTCTGGGAATGAACCTTGGGAGGCTGTCCTTTGCTTCCCAGGCTAAATTAACCAAGTTCTCATACTGTGTACCCACCCGGC AAGTTCGACCGGGTTTTACCCCAACAGGGTCGTTTTACTTGGGTGAGAACCCGAATTCAGGTGGGTTTCGGTATATTAATCTTTTGACTTTTTCTCAAAG TCAACGGATGCCCAATTTGGACCCCTTGGCCTACACTGTTGCCATGCAAGGGATTAGGATTGGCAACCAAAAATTGAACATTCCGATTTCGGCCTTTCGG CCCGATCCTAGTGGTGCGGGTCAAACCATGATTGACTCCGGGTCCGAATTCACTTACTTGGTGGATGAGGCTTACAATAAGGTGAGGGAGGAGGTGGTAA GACTGGTGGGGGCAAGGTTAAAGAAGGGATACGTGTATGGTGGTGTATCTGACATGTGTTTCAATGGCAATGCAATAGAGATCGGGCGGTTGATAGGCAA TATGGTGTTTGAATTTGACAAGGGTGTGGAGATAGTTGTAGAGAAAGAGAGGGTTTTAGCTGATGTGGGTGGAGGGGTCCATTGTGTTGGGATCGGGCGG TCGGAAATGTTGGGTGCTGCTAGCAATATAATAGGAAATTTTCACCAACAAAATATATGGGTGGAGTTTGATCTAGCCAATCGTAGAGTGGGCTTCGGTA AGGCTGATTGTAGCAGATCTGTGTAA
AA sequence Show only first row Show all	>Potri.017G131800.1 pacid=42813844 polypeptide=Potri.017G131800.1.p locus=Potri.017G131800 ID=Potri.017G131800.1.v4.1 annot-version=v4.1 MLLFYLFLLLTSCSLSAQETQHKNDSLSFSFPLTSLPRSPQASPNFYPSFISQTKKASTLKSSSFSSSPYNYRSGFKYSMILLVSLPIGTPPQTQQMILD TGSQLSWIQCHKKVPRKPPPSSVFDPSLSSSFSVLPCNHPLCKPRIPDFTLPTSCDQNRLCHYSYFYADGTLAEGNLVREKITFSRSQSTPPLILGCAEE SSDAKGILGMNLGRLSFASQAKLTKFSYCVPTRQVRPGFTPTGSFYLGENPNSGGFRYINLLTFSQSQRMPNLDPLAYTVAMQGIRIGNQKLNIPISAFR PDPSGAGQTMIDSGSEFTYLVDEAYNKVREEVVRLVGARLKKGYVYGGVSDMCFNGNAIEIGRLIGNMVFEFDKGVEIVVEKERVLADVGGGVHCVGIGR SEMLGAASNIIGNFHQQNIWVEFDLANRRVGFGKADCSRSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66180			Eukaryotic aspartyl protease f...		Potri.017G131800 [exp]	0	1
AT5G52552		CPuORF14	conserved peptide upstream ope...		Potri.004G080000 [exp]	43.71	0.6696
AT3G53990			Adenine nucleotide alpha hydro...		Potri.006G092700 [exp]	57.94	0.6348	ENOD18.1
AT2G26490			Transducin/WD40 repeat-like su...		Potri.002G130400 [exp]	60.11	0.6486
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Potri.002G068366 [exp]	122.13	0.5886
AT5G35460			unknown protein		Potri.018G051100 [exp]	131.85	0.6116
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.014G041532 [exp]	149.96	0.5847
AT4G17660			Protein kinase superfamily pro...		Potri.002G251300 [exp]	157.55	0.5596
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G441801 [exp]	174.69	0.5908
AT5G07900			Mitochondrial transcription te...		Potri.004G012400 [exp]	188.78	0.5835

Compare expression of checked genes

Potri.017G131800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.