Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16940 222 / 4e-76 carbon-sulfur lyases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G132500 [exp] 259 / 6e-91 AT5G16940 208 / 1e-70 carbon-sulfur lyases (.1.2) Potri.017G132000 [exp] 241 / 7e-84 AT5G16940 198 / 1e-66 carbon-sulfur lyases (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018517 [exp] 236 / 2e-81 AT5G16940 221 / 1e-75 carbon-sulfur lyases (.1.2) Lus10000116 [exp] 236 / 2e-81 AT5G16940 221 / 1e-75 carbon-sulfur lyases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0080 [poplar] [flax] Beta-tent PF04828 [poplar] [flax] GFA Glutathione-dependent formaldehyde-activating enzyme
Representative CDS sequence Show only first row Show all	>Potri.017G131900.2 pacid=42813994 polypeptide=Potri.017G131900.2.p locus=Potri.017G131900 ID=Potri.017G131900.2.v4.1 annot-version=v4.1 ATGGAATCAGACATGGTTATCCATAATGGAGGATGTCATTGCAGGAGAGTAAGGTGGCGAGTCCAAGCACCAAGTAGTGTTGTCGCTTGGAACTGCAACT GTTCTGATTGTTCCATGAGGGGAAACACTCACTTCATTGTCCCTTCTGAAAAGTTTGAGCTTCTTGGAGATTCCAAAGAATTTCTTACAACCTACACTTT TGGCACGCATACAGCAAAGCACACATTCTGTAAGTTTTGTGGCATAACTTCGTTTTACATTCCACGATCAAATCCAGATGGGGTTGCGGTTACTTTCAGA TGTGTGGACCCAGGGACTCTCACTCATGTTGAGATTAAGCACTATGATGGGAGGAATTGGGAAAGCTCATACAATCAGACAGGCATTGCTTCATGCTCCC AAGGTACAGACTGA
AA sequence Show only first row Show all	>Potri.017G131900.2 pacid=42813994 polypeptide=Potri.017G131900.2.p locus=Potri.017G131900 ID=Potri.017G131900.2.v4.1 annot-version=v4.1 MESDMVIHNGGCHCRRVRWRVQAPSSVVAWNCNCSDCSMRGNTHFIVPSEKFELLGDSKEFLTTYTFGTHTAKHTFCKFCGITSFYIPRSNPDGVAVTFR CVDPGTLTHVEIKHYDGRNWESSYNQTGIASCSQGTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16940			carbon-sulfur lyases (.1.2)		Potri.017G131900 [exp]	0	1
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.015G060300 [exp]	21.58	0.6952	RGP3.3
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.005G233400 [exp]	33.82	0.6659	Pt-PAP1.2
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.004G002400 [exp]	42.33	0.6774
					Potri.001G004432 [exp]	62.27	0.6658
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Potri.001G325600 [exp]	67.04	0.6487
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Potri.010G103600 [exp]	78.70	0.6572
AT4G10750			Phosphoenolpyruvate carboxylas...		Potri.001G084900 [exp]	97.91	0.5600
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Potri.008G029000 [exp]	99.46	0.6374
AT2G01300			unknown protein		Potri.004G092800 [exp]	107.23	0.6399
AT4G30996		NKS1	NA\(+\)- AND K\(+\)-SENSITIVE ...		Potri.006G187800 [exp]	117.13	0.6231

Compare expression of checked genes

Potri.017G131900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.